Browse Element(s) Details


Os.10861.1.S1_at

Description gb:AK061884.1
DB_XREF= gi:32971902
TID=Os.10861.1
CNT=28
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10861 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013146J21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-041-F04, full insert sequence.
FL= gb:AK061884.1 gb:AK068348.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0810011/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08080Os.8874.1.S1_at11/1111+4216741..4225344SWIRM domain containing protein, expressed
LOC_Os11g08090Os.18349.1.A1_s_at11/1111+4230404..4239219Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os11g08090OsAffx.18741.1.S1_at11/1111+4230404..4239219Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os11g08100Os.10861.1.S1_at11/1111+4243212..4247703Eukaryotic aspartyl protease family protein, expressed
LOC_Os11g08110NANA11+4249786..42505863-oxo-5-alpha-steroid 4-dehydrogenase family protein, expressed
LOC_Os11g08120NANA11+4258810..4261206Cyanogenic beta-glucosidase precursor, putative
LOC_Os11g08130NANA11+4265355..4266062retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g08140OsAffx.8847.1.S1_x_at1/1111+4268050..4269289retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g08140OsAffx.8338.1.S1_x_at1/1111+4268050..4269289retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g08150OsAffx.22848.3.S1_x_at4/1111+4270222..4274732retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g08150OsAffx.22848.4.S1_at2/1111+4270222..4274732retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g08150OsAffx.22848.4.S1_x_at1/1111+4270222..4274732retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10861.1.S1_at--763--4252Chr11:4247115..4247139 (25 bp)
CCGTGGATCATGTAGTAGGAGCCCC
LOC_Os11g08100
Os.10861.1.S1_at--1144--6911Chr11:4247129..4247153 (25 bp)
GTAGGAGCCCCAAGTCTATTATGTC
LOC_Os11g08100
Os.10861.1.S1_at--766--7152Chr11:4251205..4251229 (25 bp)
GTCTATTATGTCTTCCTTTCCATGA
NONE
Os.10861.1.S1_at--1016--10671Chr11:4247159..4247183 (25 bp)
TTCCATGATCATCCCTCACATTTGA
LOC_Os11g08100
Os.10861.1.S1_at--981--4711Chr11:4247191..4247215 (25 bp)
GCTGGACATCCGCTTAATCATAATT
LOC_Os11g08100
Os.10861.1.S1_at--828--10411Chr11:4247245..4247269 (25 bp)
TTATTGCTAGCCTCAAGTCACCAGT
LOC_Os11g08100
Os.10861.1.S1_at--688--2931Chr11:4247398..4247422 (25 bp)
AAGGCACTAACCTGTATTCTCCTGT
LOC_Os11g08100
Os.10861.1.S1_at--59--4951Chr11:4247542..4247566 (25 bp)
GCATTGTGAGTTGGCCTTTTGTGAC
LOC_Os11g08100
Os.10861.1.S1_at--625--3131Chr11:4247571..4247595 (25 bp)
AATTTTCCAGGTGAGCAGTTCATGT
LOC_Os11g08100
Os.10861.1.S1_at--1127--9031Chr11:4247631..4247655 (25 bp)
TGCAGAAACTACTTTGGTCTCCCTG
LOC_Os11g08100
Os.10861.1.S1_at--396--7811Chr11:4247646..4247670 (25 bp)
GGTCTCCCTGTTTCTGGCACAGAGA
LOC_Os11g08100
Target Sequence 
CCGTGGATCATGTAGTAGGAGCCCCAAGTCTATTATGTCTTCCTTTCCATGATCATCCCTCACATTTGATCCATGAGCTG
GACATCCGCTTAATCATAATTGGATGTATCACTGATGGAGTTGGAGAAAGTTATTGCTAGCCTCAAGTCACCAGTACTGT
GTAAGTGAAGAATGACAATCTGTTGCCATCCAAATAAAGTCTGTACTCTTAAACACAAATGGATGGAGAAATAAGATGAA
ATGAGAGAAGGATGAGCATGTAATAGTAATAGAGGCTGATAACAAGGCACTAACCTGTATTCTCCTGTTCATGGTGAATA
ATCATGTGCCATTTATTTGGAACCAAAATTTTGGATGCAAATAGGTGTTTTTAGTGTTAAGCTAGATTGGTTTCGTAGTT
GAATACCACAACTAGAACATACAGGTAGCATTGTGAGTTGGCCTTTTGTGACTGTAAATTTTCCAGGTGAGCAGTTCATG
TAGTTAGACTATAGCTTCAAGATGAATGACACTGTTTGCAGAAACTACTTTGGTCTCCCTGTTTCTGGCACAGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10861.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis