Browse Element(s) Details


Os.18384.1.S1_at

Description gb:AK065923.1
DB_XREF= gi:32975941
TID=Os.18384.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18384 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBb0042N11.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013048M24, full insert sequence.
FL= gb:AK065923.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3983011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39760Os.15692.1.S1_at11/113+22077957..22080213Cytochrome P450 family protein, expressed
LOC_Os03g39780OsAffx.22686.1.S1_at11/113+22086638..22089735retrotransposon protein, putative, unclassified
LOC_Os03g39780OsAffx.20729.1.S1_x_at1/113+22086638..22089735retrotransposon protein, putative, unclassified
LOC_Os03g39790OsAffx.10456.1.S1_at10/113+22090428..22092843retrotransposon protein, putative, unclassified
LOC_Os03g39820Os.45903.1.S1_at11/113+22102594..22104416expressed protein
LOC_Os03g39830Os.18384.1.S1_at11/113+22105006..22106227expressed protein
LOC_Os03g39840Os.41695.4.S1_x_at11/113+22108226..22114252transposon protein, putative, Mutator sub-class
LOC_Os03g39840Os.41695.15.S1_s_at2/113+22108226..22114252transposon protein, putative, Mutator sub-class
LOC_Os03g39850OsAffx.13256.1.S1_at11/113+22114876..22116121Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os03g39860Os.37594.2.S1_at11/113+22119282..22124546expressed protein
LOC_Os03g39860Os.37594.2.S1_x_at11/113+22119282..22124546expressed protein
LOC_Os03g39860Os.37594.1.S1_at11/113+22119282..22124546expressed protein
LOC_Os03g39870NANA3+22126936..22127262hypothetical protein
LOC_Os03g39880Os.56311.1.S1_at11/113+22127740..22129574Zinc knuckle family protein, expressed
LOC_Os03g39890NANA3+22129958..22131740retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18384.1.S1_at--1110--7931Chr03:22105726..22106012 (25 bp)
GGATTTCAGCCAATCTCGGTGGAGA
LOC_Os03g39830
Os.18384.1.S1_at--503--5971Chr03:22105438..22105462 (25 bp)
GAGAACCCGATGAAGACGCCGCTGC
LOC_Os03g39830
Os.18384.1.S1_at--5--431Chr03:22105405..22105429 (25 bp)
ATCATCTTTGGCATGTCGACGCCCT
LOC_Os03g39830
Os.18384.1.S1_at--1019--531Chr03:22105366..22105390 (25 bp)
ATCGCCTTCGCTAATGGCTGGATCA
LOC_Os03g39830
Os.18384.1.S1_at--760--9731Chr03:22105355..22105379 (25 bp)
TAATGGCTGGATCAAGGTCCCCGTC
LOC_Os03g39830
Os.18384.1.S1_at--601--7271Chr03:22105314..22105338 (25 bp)
GTCCATGTCGCATCATCATCAGTTC
LOC_Os03g39830
Os.18384.1.S1_at--249--6751Chr03:22105293..22105317 (25 bp)
GTTCATCACATCAGCAAATCTTGGA
LOC_Os03g39830
Os.18384.1.S1_at--921--9571Chr03:22105275..22105299 (25 bp)
TCTTGGAAGGTTGCTACTTGCTGCC
LOC_Os03g39830
Os.18384.1.S1_at--174--6051Chr03:22105188..22105212 (25 bp)
GAGATCTTGAGCATACCAGTACGTA
LOC_Os03g39830
Os.18384.1.S1_at--104--6751Chr03:22105105..22105129 (25 bp)
GTTCATATTAACATCCTTCCTGCTT
LOC_Os03g39830
Os.18384.1.S1_at--348--10331Chr03:22105042..22105066 (25 bp)
TTTATGGCATCAGCTTTGTCAGTTG
LOC_Os03g39830
Target Sequence 
GGATTTCAGCCAATCTCGGTGGAGATGGGGAGGTGAAGCCTGCAGGTAACAAGAAGAAGTTCATCACCAGAGAAGAGGAG
CCAGAGCAGTATTGGCAGGCGGCAGGGGAGAGGAAGGGCGAGAACCCGATGAAGACGCCGCTGCCCTACATCATCATCTT
TGGCATGTCGACGCCCTTCGTCATCCTCGCCATCGCCTTCGCTAATGGCTGGATCAAGGTCCCCGTCCGGTGAACCTCCT
CCCGTCCATGTCGCATCATCATCAGTTCATCACATCAGCAAATCTTGGAAGGTTGCTACTTGCTGCCAAGAAACTCCTCA
CTGCGACCACTGCACTCCTACCGGGAGCCCTGAAGAGTAAAATTTCATAGAGATCTTGAGCATACCAGTACGTAATGTAT
GTGATAAACAAGTACCTTTTTTCCCAGTACTGTAAATCTGTAAGTAATTACAGTTCATATTAACATCCTTCCTGCTTCTG
ATCCAAGGAGGTTTTGTCATGTACAAGAGGAGGTTTTTATGGCATCAGCTTTGTCAGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18384.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis