Browse Element(s) Details


Os.18392.1.S1_at

Description gb:AK068138.1
DB_XREF= gi:32978156
TID=Os.18392.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18392 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013135D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013135D01, full insert sequence.
FL= gb:AK068138.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3773011/11MYB-like transcription factor DIVARICATA, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37690Os.17042.1.S1_at11/115+21977725..21980654Coronatine-insensitive protein 1, putative, expressed
LOC_Os05g37690OsAffx.16860.1.S1_at1/115+21977725..21980654Coronatine-insensitive protein 1, putative, expressed
LOC_Os05g37700Os.18881.1.S1_at11/115+21985304..21989715Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os05g37700Os.7745.1.S1_at11/115+21985304..21989715Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os05g37700Os.23325.1.A1_at1/115+21985304..21989715Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os05g37710OsAffx.14998.1.S1_at10/115+21992483..21993153hypothetical protein
LOC_Os05g37720OsAffx.4549.1.S1_at10/115+21993561..21996895hypothetical protein
LOC_Os05g37730Os.18392.1.S1_at11/115+21998191..22000281MYB-like transcription factor DIVARICATA, putative, expressed
LOC_Os05g37740OsAffx.22711.4.A1_x_at5/115+22014949..22015620transposon protein, putative, unclassified
LOC_Os05g37750OsAffx.21171.4.S1_x_at6/115+22016699..22018354retrotransposon protein, putative, unclassified
LOC_Os05g37750OsAffx.21171.2.S1_at2/115+22016699..22018354retrotransposon protein, putative, unclassified
LOC_Os05g37750OsAffx.21171.3.S1_x_at2/115+22016699..22018354retrotransposon protein, putative, unclassified
LOC_Os05g37760OsAffx.21171.5.S1_at3/115+22021606..22025575retrotransposon protein, putative, unclassified
LOC_Os05g37760OsAffx.20729.1.S1_x_at2/115+22021606..22025575retrotransposon protein, putative, unclassified
LOC_Os05g37760OsAffx.21171.5.S1_x_at1/115+22021606..22025575retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18392.1.S1_at--573--7051Chr05:21998656..21998680 (25 bp)
GTAACAGCACAGTAGCCAGGCATTG
LOC_Os05g37730
Os.18392.1.S1_at--118--931Chr05:21998639..21998663 (25 bp)
AGGCATTGCGCTGCTGCTAAATTAA
LOC_Os05g37730
Os.18392.1.S1_at--237--3131Chr05:21998620..21998644 (25 bp)
AATTAAGCTCCCTACTACCGTGTAT
LOC_Os05g37730
Os.18392.1.S1_at--26--3851Chr05:21998499..21998523 (25 bp)
CTGCATTTCGCATCTGTGTACATAA
LOC_Os05g37730
Os.18392.1.S1_at--804--1991Chr05:21998429..21998453 (25 bp)
ACTCCATTGATTATCTCCTGTGCTA
LOC_Os05g37730
Os.18392.1.S1_at--975--7651Chr05:21998399..21998423 (25 bp)
GGAGGCACAGGATGGGTACTACTAC
LOC_Os05g37730
Os.18392.1.S1_at--81--9891Chr05:21998380..21998404 (25 bp)
TACTACCAGCTAGACACCGTTTTTG
LOC_Os05g37730
Os.18392.1.S1_at--1118--6951Chr05:21998296..21998320 (25 bp)
GTAGCAGCAGCATATTGTCTCTGTT
LOC_Os05g37730
Os.18392.1.S1_at--1069--8731Chr05:21998263..21998287 (25 bp)
TGTCAAGGCTCTCTAGTGTTCAGTT
LOC_Os05g37730
Os.18392.1.S1_at--264--7691Chr05:21998236..21998260 (25 bp)
GGGTATTAGCATTGGTCACCCTCTC
LOC_Os05g37730
Os.18392.1.S1_at--939--3751Chr05:21998216..21998240 (25 bp)
CTCTCATTGACCCTTGCTTTATTAA
LOC_Os05g37730
Target Sequence 
GTAACAGCACAGTAGCCAGGCATTGCGCTGCTGCTAAATTAAGCTCCCTACTACCGTGTATCCCGGATGATGAGAGGAAG
AAGAAGAAGAAGAAGAAGAATCACGAGATAGAAGAAAAAGAAGAAGAAGAAGAAGAAGCATATTGGACATGGCATCTCTG
CATTTCGCATCTGTGTACATAAGACCAAGACCAAGGTTAAATAATTAGTTCACAATTGATATTTGATACTCCATTGATTA
TCTCCTGTGCTATGGGAGGAGGCACAGGATGGGTACTACTACCAGCTAGACACCGTTTTTGTTGATGTACTATTAGTCAA
GTTATTATTGTCATGCAAGTATTATTTGGAGATATAGCACGTAGCAGCAGCATATTGTCTCTGTTTTTTTTTTTTGTCAA
GGCTCTCTAGTGTTCAGTTGAGGGTATTAGCATTGGTCACCCTCTCATTGACCCTTGCTTTATTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18392.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis