Browse Element(s) Details

Os.18395.1.S1_s_at

Description

gb:AK062516.1
DB_XREF= gi:32972534
TID=Os.18395.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18395 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-104-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-104-C07, full insert sequence.
FL= gb:AK062516.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g15620	11/11	GAST1 protein precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g15550	OsAffx.15441.1.S1_at	11/11	6	+	8820963..8822144	hypothetical protein
LOC_Os06g15560	Os.54514.1.S1_at	3/11	6	+	8824457..8826102	expressed protein
LOC_Os06g15560	OsAffx.31349.2.S1_x_at	1/11	6	+	8824457..8826102	expressed protein
LOC_Os06g15570	Os.37727.1.S1_at	11/11	6	+	8825990..8831305	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g15580	OsAffx.27649.1.S1_at	9/11	6	+	8832274..8833387	hypothetical protein
LOC_Os06g15590	OsAffx.27650.1.S1_at	11/11	6	+	8833949..8834630	PGP224, putative
LOC_Os06g15600	OsAffx.15442.1.S1_at	11/11	6	+	8835979..8836908	Chemocyanin precursor, putative
LOC_Os06g15610	NA	NA	6	+	8845792..8846093	hypothetical protein
LOC_Os06g15620	Os.18395.1.S1_s_at	11/11	6	+	8846990..8847810	GAST1 protein precursor, putative, expressed
LOC_Os06g15620	Os.48105.1.A1_at	11/11	6	+	8846990..8847810	GAST1 protein precursor, putative, expressed
LOC_Os06g15620	OsAffx.27652.1.S1_x_at	11/11	6	+	8846990..8847810	GAST1 protein precursor, putative, expressed
LOC_Os06g15630	NA	NA	6	+	8853014..8854636	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g15640	Os.1709.1.S1_x_at	11/11	6	+	8856882..8862471	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g15640	Os.31497.2.S1_x_at	6/11	6	+	8856882..8862471	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g15650	Os.38751.1.A1_at	9/11	6	+	8864337..8865720	retrotransposon protein, putative, unclassified
LOC_Os06g15650	Os.49802.1.S2_at	1/11	6	+	8864337..8865720	retrotransposon protein, putative, unclassified
LOC_Os06g15650	OsAffx.28492.1.S1_at	1/11	6	+	8864337..8865720	retrotransposon protein, putative, unclassified
LOC_Os06g15660	Os.54287.1.S1_at	10/11	6	+	8867034..8868887	expressed protein
LOC_Os06g15670	OsAffx.27654.1.S1_at	11/11	6	+	8871485..8873865	hypothetical protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0009739	biological_process	response to gibberellic acid stimulus
GO:0009740	biological_process	gibberellic acid mediated signaling

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.18395.1.S1_s_at--318--169	1	Chr06:8847391..8847415 (25 bp)	AACAACTGGAAGACCAAGGAAGGCG	LOC_Os06g15620
Os.18395.1.S1_s_at--774--333	1	Chr06:8847247..8847271 (25 bp)	CACTGGTTTAGCTCATGGATCCGGT	LOC_Os06g15620
Os.18395.1.S1_s_at--288--681	1	Chr06:8847242..8847266 (25 bp)	GTTTAGCTCATGGATCCGGTTGATT	LOC_Os06g15620
Os.18395.1.S1_s_at--643--375	1	Chr06:8847236..8847260 (25 bp)	CTCATGGATCCGGTTGATTAGTTAA	LOC_Os06g15620
Os.18395.1.S1_s_at--890--1019	1	Chr06:8847197..8847221 (25 bp)	TATTGCTAGATCTGGGCTTATAAGT	LOC_Os06g15620
Os.18395.1.S1_s_at--641--283	1	Chr06:8847176..8847200 (25 bp)	AAGTATTAGTTTATCCTGTTCTAGT	LOC_Os06g15620
Os.18395.1.S1_s_at--1145--55	1	Chr06:8847164..8847188 (25 bp)	ATCCTGTTCTAGTAAGGTTGTTGGT	LOC_Os06g15620
Os.18395.1.S1_s_at--4--617	1	Chr06:8847111..8847135 (25 bp)	GAGGATTCGTCAAAGCTGGTCAAAA	LOC_Os06g15620
Os.18395.1.S1_s_at--1122--857	2	Chr06:8847095..8847119 (25 bp)	TGGTCAAAAACTTGGATCCCCTCTC	LOC_Os06g15620
Os.18395.1.S1_s_at--543--419	1	Chr06:8847077..8847101 (25 bp)	CCCTCTCCCTGTAGTGATTGATTGA	LOC_Os06g15620
Os.18395.1.S1_s_at--1014--659	1	Chr06:8847062..8847086 (25 bp)	GATTGATTGATTTGCTACTACTGGA	LOC_Os06g15620

Target Sequence

AACAACTGGAAGACCAAGGAAGGCGGCCCCAAGTGCCCCTAAGATGCATGCCTTTGTTTCTTTNNTCTTCTTTTTTTNTT
TTTTTACCCTATGATTAATACCNTCCTCCTACTAGTTCTACATTGGTGTCACTNCCTCACTGACACTGGTTTAGCTCATG
GATCCGGTTGATTAGTTAAATGGTGGTGGGGTTTATTGCTAGATCTGGGCTTATAAGTATTAGTTTATCCTGTTCTAGTA
AGGTTGTTGGTTGGGGGNATGTGTGTGAGAGAGGAGAGTGAGGATTCGTCAAAGCTGGTCAAAAACTTGGATCCCCTCTC
CCTGTAGTGATTGATTGATTTGCTACTACTGGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis