Browse Element(s) Details


Os.18458.1.S1_at

Description gb:AK119965.1
DB_XREF= gi:37989588
TID=Os.18458.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18458 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-184-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-184-D08, full insert sequence.
FL= gb:AK119965.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5715011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57110Os.17162.2.S1_x_at11/111+33326901..33337069SNF2 domain-containing protein, putative, expressed
LOC_Os01g57120NANA1+33342773..33347066retrotransposon protein, putative, unclassified
LOC_Os01g57130NANA1+33348199..33351347retrotransposon protein, putative, unclassified
LOC_Os01g57140OsAffx.23815.1.S1_at11/111+33353777..33354175hypothetical protein
LOC_Os01g57150Os.18458.1.S1_at11/111+33355959..33357337expressed protein
LOC_Os01g57160Os.46314.3.S1_at4/111+33360451..33366304transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57160OsAffx.7362.1.S1_x_at1/111+33360451..33366304transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57160OsAffx.1365.1.S1_at1/111+33360451..33366304transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57170OsAffx.23816.1.S1_at11/111+33367703..33368507hypothetical protein
LOC_Os01g57180OsAffx.22940.2.S1_s_at11/111+33369542..33370705hypothetical protein
LOC_Os01g57180OsAffx.22940.1.S1_s_at11/111+33369542..33370705hypothetical protein
LOC_Os01g57180OsAffx.22940.3.S1_x_at8/111+33369542..33370705hypothetical protein
LOC_Os01g57180OsAffx.22940.2.S1_at7/111+33369542..33370705hypothetical protein
LOC_Os01g57180OsAffx.22940.5.S1_x_at5/111+33369542..33370705hypothetical protein
LOC_Os01g57180OsAffx.22940.5.S1_at2/111+33369542..33370705hypothetical protein
LOC_Os01g57180OsAffx.31552.2.S1_at1/111+33369542..33370705hypothetical protein
LOC_Os01g57190NANA1+33371028..33371651hypothetical protein
LOC_Os01g57210Os.16815.1.S1_at11/111+33377696..33385344Katanin p80 WD40-containing subunit B1 homolog 1, putative, expressed
LOC_Os01g57210Os.5306.1.S1_at11/111+33377696..33385344Katanin p80 WD40-containing subunit B1 homolog 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18458.1.S1_at--915--4211Chr01:33356412..33356436 (25 bp)
CCGCAGCCAGAAGAGGACGCCATGA
LOC_Os01g57150
Os.18458.1.S1_at--1132--7731Chr01:33356305..33356329 (25 bp)
GGTGTCCTTGGAATGCTTCATCTTC
LOC_Os01g57150
Os.18458.1.S1_at--929--8491Chr01:33356235..33356259 (25 bp)
TGGCATCGCGCTATTTTCCTTTGAA
LOC_Os01g57150
Os.18458.1.S1_at--782--7491Chr01:33356137..33356161 (25 bp)
GTGGTGGTGTAATGCTACTGTCATA
LOC_Os01g57150
Os.18458.1.S1_at--53--9931Chr01:33356122..33356146 (25 bp)
TACTGTCATATTCCGGTTATTAACC
LOC_Os01g57150
Os.18458.1.S1_at--406--3011Chr01:33356085..33356109 (25 bp)
AATGACAGCAGCTTTGACTTTTGGC
LOC_Os01g57150
Os.18458.1.S1_at--1089--5671Chr01:33356070..33356094 (25 bp)
GACTTTTGGCGTAGGATGGGCCCTC
LOC_Os01g57150
Os.18458.1.S1_at--256--771Chr01:33356055..33356079 (25 bp)
ATGGGCCCTCCGATTGGAATTGGAC
LOC_Os01g57150
Os.18458.1.S1_at--441--8391Chr01:33356030..33356054 (25 bp)
GGCGCTTGAACGTTGGATGTTTCTT
LOC_Os01g57150
Os.18458.1.S1_at--740--2011Chr01:33355993..33356017 (25 bp)
ACTAGCCCTCGCTGTATTTTGTAGA
LOC_Os01g57150
Os.18458.1.S1_at--192--1351Chr01:33355971..33355995 (25 bp)
AGAGCTCTTTTTCACTAATCGTCAA
LOC_Os01g57150
Target Sequence 
CCGCAGCCAGAAGAGGACGCCATGACCGCCGACGGCGAGCCCAGCATTGCGGACGCCGCCAGCGCCGGCGGCGACGGCGA
GGGGAAGGAGTCGCTGGACAACCCGCTGGTGTCCTTGGAATGCTTCATCTTCCTCTAGTGGCGCTGCACTACCGCCGTCG
TGTCCTCCTTCGTCAGGTGGCATCGCGCTATTTTCCTTTGAAAATGTTGCGCTAATCTTGTTTAGTTTAGATGTTCTGTG
TTAAGCTGGTGTGGTAATTAGTGGGTAAACTACTTGTGGTGGTGTAATGCTACTGTCATATTCCGGTTATTAACCTATGT
CGGGTGGAATGACAGCAGCTTTGACTTTTGGCGTAGGATGGGCCCTCCGATTGGAATTGGACGGCGCTTGAACGTTGGAT
GTTTCTTTTTGGCTTTTGGACTAGCCCTCGCTGTATTTTGTAGAGCTCTTTTTCACTAATCGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18458.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis