Browse Element(s) Details


Os.18486.1.S1_at

Description gb:AK068607.1
DB_XREF= gi:32978624
TID=Os.18486.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18486 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013157O06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013157O06, full insert sequence.
FL= gb:AK068607.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3267011/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32610Os.8515.1.A1_at1/119+19458688..19462253expressed protein
LOC_Os09g32620NANA9+19464287..19465759Chloroplastic quinone-oxidoreductase homolog, putative, expressed
LOC_Os09g32630OsAffx.30123.1.S1_at11/119+19466227..19466736hypothetical protein
LOC_Os09g32640Os.55534.1.A1_at11/119+19468469..19471212Chloroplastic quinone-oxidoreductase homolog, putative, expressed
LOC_Os09g32650Os.51218.1.S1_at11/119+19472098..19476734leucyl-tRNA synthetase family protein, expressed
LOC_Os09g32660Os.52571.1.A1_at11/119+19478243..19481680expressed protein
LOC_Os09g32670Os.18486.1.S1_at11/119+19485779..19487685NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g32680Os.187.1.S1_s_at11/119+19498552..19502722G1/S-specific cyclin C-type, putative, expressed
LOC_Os09g32680Os.187.1.S1_at11/119+19498552..19502722G1/S-specific cyclin C-type, putative, expressed
LOC_Os09g32690Os.6646.1.S1_at11/119+19502940..19506572Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g32690Os.8957.2.S1_x_at1/119+19502940..19506572Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g32700Os.27781.1.S1_at11/119+19506638..19508742expressed protein
LOC_Os09g32710Os.15502.1.S1_at11/119+19508826..19512260expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009225biological_processnucleotide-sugar metabolism
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
GO:0050378molecular_functionUDP-glucuronate 4-epimerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18486.1.S1_at--587--2731Chr09:19486343..19486367 (25 bp)
AAGAAGGCCAACAAGCGCATCGTCG
LOC_Os09g32670
Os.18486.1.S1_at--752--5051Chr09:19486063..19486087 (25 bp)
GCAGCACAACACCATGAGACACCAT
LOC_Os09g32670
Os.18486.1.S1_at--296--5991Chr09:19486048..19486072 (25 bp)
GAGACACCATGCAAGTGTGTATTCC
LOC_Os09g32670
Os.18486.1.S1_at--464--7471Chr09:19486034..19486058 (25 bp)
GTGTGTATTCCATAGCTAGTTCTTG
LOC_Os09g32670
Os.18486.1.S1_at--776--3611Chr09:19486013..19486037 (25 bp)
CTTGGAGGCTCTTGTCTGTATAACA
LOC_Os09g32670
Os.18486.1.S1_at--503--6211Chr09:19486009..19486033 (25 bp)
GAGGCTCTTGTCTGTATAACATTGT
LOC_Os09g32670
Os.18486.1.S1_at--970--7051Chr09:19485986..19486010 (25 bp)
GTAAGTGCTTATTGTTTAAGCCCCT
LOC_Os09g32670
Os.18486.1.S1_at--116--7331Chr09:19485982..19486006 (25 bp)
GTGCTTATTGTTTAAGCCCCTATTA
LOC_Os09g32670
Os.18486.1.S1_at--594--811Chr09:19485898..19485922 (25 bp)
ATGGTGGAGAAATAACACTGTTGTT
LOC_Os09g32670
Os.18486.1.S1_at--575--2411Chr09:19485829..19485853 (25 bp)
AAAACACTTGGAAGCCAGGACAGAA
LOC_Os09g32670
Os.18486.1.S1_at--1027--1931Chr09:19485790..19485814 (25 bp)
ACTGGCTTCCTTCGAATCAAAATGT
LOC_Os09g32670
Target Sequence 
AAGAAGGCCAACAAGCGCATCGTCGCCATGCCCAGCAATGGCGACGTGCCCTTCACCCACGCCAACGTCACCCACGCCGC
CCACGACTTCGGCTACCGCCCCACCACCTCCCTCGACGCCGGCCTNCGNCCACTTCGTCGACTGGTTCGCCGACTACTAC
AAGCTCAAGCTCGACGTCCCCAAGATCGCCGCCAAGGTCGCCGGCGCCGGCAAGCCCTCCTCCTCGTCGGCCTCCAAGAA
GAAGAAGAAGGCCGCGGCGATGTCGGCGTCATCATGATCNAGCAGCACAACACCATGAGACACCATGCAAGTGTGTATTC
CATAGCTAGTTCTTGGAGGCTCTTGTCTGTATAACATTGTAAGTGCTTATTGTTTAAGCCCCTATTAATTTCTTTTCTTC
TTCTTCTTGAGGTGTTTAATTTTTAGTGATTAGAAACAAGGGAATAATGGTGGAGAAATAACACTGTTGTTGGTANATAA
ATATGAGAGGGGTATAGAGATGATGATAAAGATCAAAAACACTTGGAAGCCAGGACAGAAAGAAAGATGAANTNACTGGC
TTCCTTCGAATCAAAATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18486.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis