Browse Element(s) Details


Os.18512.1.S1_at

Description gb:AK072498.1
DB_XREF= gi:32982521
TID=Os.18512.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18512 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023127O11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023127O11, full insert sequence.
FL= gb:AK072498.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0698011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06950Os.27134.1.A1_at11/113+3519262..3529808Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os03g06950Os.10708.2.S1_at1/113+3519262..3529808Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os03g06960Os.18361.1.S1_at11/113+3530886..3533526Vesicle-associated membrane protein 724, putative, expressed
LOC_Os03g06970Os.51791.1.S1_at11/113+3534601..3537463TPR Domain containing protein, expressed
LOC_Os03g06980Os.18512.1.S1_at11/113+3540707..3544476expressed protein
LOC_Os03g06980OsAffx.12759.1.S1_s_at11/113+3540707..3544476expressed protein
LOC_Os03g06990OsAffx.3158.1.S1_at11/113+3545888..3547932oxidoreductase, 2OG-Fe oxygenase family protein, putative
LOC_Os03g07000OsAffx.25000.1.S1_at11/113+3549088..3550939prolyl 4-hydroxylase, putative, expressed
LOC_Os03g07010OsAffx.3900.1.S1_at11/113+3552527..3555974retrotransposon protein, putative, unclassified
LOC_Os03g07010OsAffx.21921.1.S1_at1/113+3552527..3555974retrotransposon protein, putative, unclassified
LOC_Os03g07010OsAffx.3584.1.S1_x_at1/113+3552527..3555974retrotransposon protein, putative, unclassified
LOC_Os03g07020NANA3+3558912..3562217retrotransposon protein, putative, unclassified
LOC_Os03g07030NANA3+3562832..3568987retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18512.1.S1_at--838--8111Chr03:3540867..3540891 (25 bp)
GGACGGAACCCTAGCTGTTTCTTTG
LOC_Os03g06980
Os.18512.1.S1_at--485--1811Chr03:3540860..3540884 (25 bp)
ACCCTAGCTGTTTCTTTGTGATCAA
LOC_Os03g06980
Os.18512.1.S1_at--48--7411Chr03:3540843..3540867 (25 bp)
GTGATCAATCGACTAGTCTTCCCAG
LOC_Os03g06980
Os.18512.1.S1_at--330--10051Chr03:3540830..3540854 (25 bp)
TAGTCTTCCCAGCTTTTCGCTATAA
LOC_Os03g06980
Os.18512.1.S1_at--733--1551Chr03:3540820..3540844 (25 bp)
AGCTTTTCGCTATAATCATCAATGG
LOC_Os03g06980
Os.18512.1.S1_at--978--2971Chr03:3540800..3540824 (25 bp)
AATGGTGTCTGCCATTGCTTCGATT
LOC_Os03g06980
Os.18512.1.S1_at--67--3611Chr03:3540788..3540812 (25 bp)
CATTGCTTCGATTCTGTGGGATTTT
LOC_Os03g06980
Os.18512.1.S1_at--51--5291Chr03:3540758..3540782 (25 bp)
GAATGTTAAGTTTTACCTTGGACAT
LOC_Os03g06980
Os.18512.1.S1_at--159--10451Chr03:3540746..3540770 (25 bp)
TTACCTTGGACATATTTTCCTGTAT
LOC_Os03g06980
Os.18512.1.S1_at--1017--10291Chr03:3540731..3540755 (25 bp)
TTTCCTGTATTTAAGAGTGCATTTT
LOC_Os03g06980
Os.18512.1.S1_at--1054--6091Chr03:3540717..3540741 (25 bp)
GAGTGCATTTTTGAATAGCTTGTCT
LOC_Os03g06980
Target Sequence 
GGACGGAACCCTAGCTGTTTCTTTGTGATCAATCGACTAGTCTTCCCAGCTTTTCGCTATAATCATCAATGGTGTCTGCC
ATTGCTTCGATTCTGTGGGATTTTGACAAGAATGTTAAGTTTTACCTTGGACATATTTTCCTGTATTTAAGAGTGCATTT
TTGAATAGCTTGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18512.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis