Browse Element(s) Details


Os.18530.1.S1_at

Description gb:AK069407.1
DB_XREF= gi:32979431
TID=Os.18530.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18530 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Speckle-type POZ protein-like~contains ESTs AU030338(E50924),AU030339(E50924) (OJ1354_H07.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023015F07, full insert sequence.
FL= gb:AK106061.1 gb:AK068718.1 gb:AK069407.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1549011/11BTB/POZ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15460Os.409.1.S1_at11/117+8964330..8969177Metal transporter Nramp1, putative, expressed
LOC_Os07g15470NANA7+8972971..8978663retrotransposon protein, putative, unclassified
LOC_Os07g15480NANA7+8979594..8981217hypothetical protein
LOC_Os07g15490Os.18530.1.S1_at11/117+8987441..8991142BTB/POZ domain containing protein, expressed
LOC_Os07g15490OsAffx.24019.1.S1_at1/117+8987441..8991142BTB/POZ domain containing protein, expressed
LOC_Os07g15490OsAffx.24019.1.S1_x_at1/117+8987441..8991142BTB/POZ domain containing protein, expressed
LOC_Os07g15500OsAffx.28461.1.S1_at11/117+8992346..8995512OB-fold nucleic acid binding domain containing protein, expressed
LOC_Os07g15510Os.34643.1.S1_at1/117+8996899..8999625retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g15520NANA7+9000605..9001033retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g15530Os.10688.1.S1_at2/117+9002297..9002524expressed protein
LOC_Os07g15540Os.29967.1.S1_at11/117+9003509..9006804GAF domain containing protein, expressed
LOC_Os07g15550NANA7+9011871..9013223hypothetical protein
LOC_Os07g15560OsAffx.28462.1.S1_at11/117+9015235..9016752retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18530.1.S1_at--517--5431Chr07:8990556..8990580 (25 bp)
GAACCTGAAGGCCTACTGTGAGAAA
LOC_Os07g15490
Os.18530.1.S1_at--938--5591Chr07:8990605..8990629 (25 bp)
GACAATGCCATCACGCATTATGCGT
LOC_Os07g15490
Os.18530.1.S1_at--394--1411Chr07:8990663..8990687 (25 bp)
AGACATCCCTGGCAGCGATCATGGA
LOC_Os07g15490
Os.18530.1.S1_at--344--8151Chr07:8990685..8990709 (25 bp)
GGACAACATGTCAACGCTGGCAGAT
LOC_Os07g15490
Os.18530.1.S1_at--902--10451Chr07:8990732..8990756 (25 bp)
TTGAGAAGGACCCAAGGCTTGTTGT
LOC_Os07g15490
Os.18530.1.S1_at--123--9811Chr07:8990878..8990902 (25 bp)
TAACCAAGCTTTTGCATGTTCATGC
LOC_Os07g15490
Os.18530.1.S1_at--94--3571Chr07:8990919..8990943 (25 bp)
CATCAAATTGTCATCCTGCGGTGTA
LOC_Os07g15490
Os.18530.1.S1_at--630--7751Chr07:8990938..8990962 (25 bp)
GGTGTAGGCGCAGAACAGCTATTTC
LOC_Os07g15490
Os.18530.1.S1_at--168--5211Chr07:8990974..8990998 (25 bp)
GAATTGATACTGTGTGCTCGCTACT
LOC_Os07g15490
Os.18530.1.S1_at--1050--6411Chr07:8991009..8991033 (25 bp)
GATCTATTGCCATCTTTATGTAACA
LOC_Os07g15490
Os.18530.1.S1_at--480--7391Chr07:8991051..8991075 (25 bp)
GTGATGATCATCAAACACACTCAGT
LOC_Os07g15490
Target Sequence 
GAACCTGAAGGCCTACTGTGAGAAATTCTTAACATCCAAAGTGAGCAACGACAATGCCATCACGCATTATGCGTTTGCGC
ATCGCCACAGCGCGAAGCAGCTGCTCGAGACATCCCTGGCAGCGATCATGGACAACATGTCAACGCTGGCAGATCGGGAG
GAATACAAGGAGCTTGTTGAGAAGGACCCAAGGCTTGTTGTGGAGATATATGAAGCCTATCTGAACAGACAAGTGAACAC
TGCTGCTGGGAAGGAGACAGATTCCAGTAGTAGGAAGGGGTAATTCAAAAGAAAACTGCTATCAGAGATGTAATTAATGT
TCTAACCAAGCTTTTGCATGTTCATGCTAGGCAAAGACTGGCACATCAAATTGTCATCCTGCGGTGTAGGCGCAGAACAG
CTATTTCTGTATATGCTTGAATTGATACTGTGTGCTCGCTACTGATAGAATGAGATCTATTGCCATCTTTATGTAACATA
TAGGTCAACTGATATGTGATGATCATCAAACACACTCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18530.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis