Browse Element(s) Details


Os.18533.1.S1_at

Description gb:AK106823.1
DB_XREF= gi:32992032
TID=Os.18533.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18533 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-116-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-E05, full insert sequence.
FL= gb:AK106823.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4596011/11serine proteinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45930Os.5872.1.S2_at11/114+26981176..26986468RNA recognition motif, putative, expressed
LOC_Os04g45930Os.5872.1.S1_at11/114+26981176..26986468RNA recognition motif, putative, expressed
LOC_Os04g45940OsAffx.4103.1.S1_s_at11/114+26991087..26992140expressed protein
LOC_Os04g45950Os.49457.1.A1_at11/114+26995029..26999754Amino acid permease family protein, expressed
LOC_Os04g45960Os.18533.1.S1_at11/114+27003529..27007237serine proteinase, putative, expressed
LOC_Os04g45970Os.52150.1.S1_at11/114+27014274..27017490Glutamate dehydrogenase, putative, expressed
LOC_Os04g45970Os.52150.1.S1_x_at11/114+27014274..27017490Glutamate dehydrogenase, putative, expressed
LOC_Os04g45980NANA4+27022063..27022636expressed protein
LOC_Os04g45990Os.48725.1.S1_at11/114+27024995..27027705YDG/SRA domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0048196cellular_componentextracellular matrix (sensu Magnoliophyta)
GO:0004289molecular_functionsubtilase activity
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18533.1.S1_at--275--1831Chr04:27006721..27006745 (25 bp)
ACGCTGAGGATCGTGCTCAACACCA
LOC_Os04g45960
Os.18533.1.S1_at--499--10731Chr04:27006844..27006868 (25 bp)
TTGAGCCCGTGAAGCCCCGAACAGG
LOC_Os04g45960
Os.18533.1.S1_at--766--10471Chr04:27006896..27006920 (25 bp)
TTACGTATACGTATGCGAGCGGATG
LOC_Os04g45960
Os.18533.1.S1_at--290--10051Chr04:27007010..27007034 (25 bp)
TATTATGGGCCGCAACGGACCAACC
LOC_Os04g45960
Os.18533.1.S1_at--916--7871Chr04:27007052..27007076 (25 bp)
GGTTATTCCTCTAGTTGGGCCGGAG
LOC_Os04g45960
Os.18533.1.S1_at--159--9771Chr04:27007100..27007124 (25 bp)
TAATGGGCTTTCGTTCTGATGCAAA
LOC_Os04g45960
Os.18533.1.S1_at--253--6331Chr04:27007117..27007141 (25 bp)
GATGCAAAGCAACGGCCTCTGCTAA
LOC_Os04g45960
Os.18533.1.S1_at--475--9091Chr04:27007136..27007160 (25 bp)
TGCTAACTTCGGCTTGTCGAGCATC
LOC_Os04g45960
Os.18533.1.S1_at--1033--8711Chr04:27007150..27007174 (25 bp)
TGTCGAGCATCTCTAGCAGCTTTTG
LOC_Os04g45960
Os.18533.1.S1_at--94--5071Chr04:27007165..27007189 (25 bp)
GCAGCTTTTGCCAGATGCCAGACTA
LOC_Os04g45960
Os.18533.1.S1_at--912--3491Chr04:27007191..27007215 (25 bp)
CATGGACGGGTTTGACTGTGGCTTC
LOC_Os04g45960
Target Sequence 
ACGCTGAGGATCGTGCTCAACACCACCGCGCCGGGGAACACCTTCAGCTTCGGCGAGGTGGTCCTCAGGGGCGACAAGAA
GCACACCGTGAGGATCCCCCTCGCTGTCTTCCCCGCCGCGGCGTTGAGCCCGTGAAGCCCCGAACAGGGNTAGTCCTGGT
ATATACAAANATTACTTACGTATACGTATGCGAGCGGATGGAGTTGTACGATGAANGAATAACATGTATACATACACTAT
ACTCGTGTTCGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCGGATATTATGGGCCGCAACGGACCAACCGGACTG
TGCCCCTGCTGGGTTATTCCTCTAGTTGGGCCGGAGCACGGAGGAGAGCTGGTCAGCCATAATGGGCTTTCGTTCTGATG
CAAAGCAACGGCCTCTGCTAACTTCGGCTTGTCGAGCATCTCTAGCAGCTTTTGCCAGATGCCAGACTACCATGGACGGG
TTTGACTGTGGCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18533.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis