Browse Element(s) Details


Os.18596.1.S1_at

Description gb:AK067886.1
DB_XREF= gi:32977904
TID=Os.18596.1
CNT=15
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.18596 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013128L13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013128L13, full insert sequence.
FL= gb:AK067886.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7002011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g69980Os.12146.1.S1_at10/111+40804089..40805984TCP family transcription factor containing protein, expressed
LOC_Os01g69980OsAffx.15397.1.S1_x_at1/111+40804089..40805984TCP family transcription factor containing protein, expressed
LOC_Os01g69984Os.51027.1.S1_at10/111+40805985..40806305NA
LOC_Os01g69990Os.17442.1.S1_at10/111+40810155..40816509GYF domain containing protein, expressed
LOC_Os01g70000Os.55300.1.S1_at11/111+40820543..40822563expressed protein
LOC_Os01g70010OsAffx.11801.1.S1_at11/111+40822975..4082512860S ribosomal protein L7a, putative, expressed
LOC_Os01g70020Os.18596.1.S1_at11/111+40827996..40834366expressed protein
LOC_Os01g70020Os.50767.1.S1_x_at11/111+40827996..40834366expressed protein
LOC_Os01g70030NANA1+40840606..40845440transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g70040NANA1+40848049..40851294transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g70050OsAffx.23985.1.S1_at11/111+40853440..40853961Auxin responsive protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18596.1.S1_at--877--7391Chr01:40834030..40834054 (25 bp)
GTGATGGTCGCTTGTGTTAGTGTTA
LOC_Os01g70020
Os.18596.1.S1_at--486--6331Chr01:40834057..40834081 (25 bp)
GATGCAGGACTTTCTAGCCCAACAT
LOC_Os01g70020
Os.18596.1.S1_at--918--4371Chr01:40834075..40834099 (25 bp)
CCAACATTGCCGTTTGGGCTGTGTT
LOC_Os01g70020
Os.18596.1.S1_at--1115--10831Chr01:40834088..40834112 (25 bp)
TTGGGCTGTGTTGGGTCTGTACAAT
LOC_Os01g70020
Os.18596.1.S1_at--321--691Chr01:40834111..40834135 (25 bp)
ATGAGGGCACCGCAACAATGAACTG
LOC_Os01g70020
Os.18596.1.S1_at--542--211Chr01:40834167..40834191 (25 bp)
ATTTGATAGCCACACACACCTAGTT
LOC_Os01g70020
Os.18596.1.S1_at--924--3611Chr01:40834214..40834238 (25 bp)
CTTGTAGTCTAGTTGCTGGTCATGT
LOC_Os01g70020
Os.18596.1.S1_at--1047--7811Chr01:40834231..40834255 (25 bp)
GGTCATGTACAATAGCTGTGCTGTT
LOC_Os01g70020
Os.18596.1.S1_at--606--4731Chr01:40834245..40834269 (25 bp)
GCTGTGCTGTTATAACTTTGCTTAG
LOC_Os01g70020
Os.18596.1.S1_at--792--4891Chr01:40834264..40834288 (25 bp)
GCTTAGGTAGCTAGCCTGACTGTAA
LOC_Os01g70020
Os.18596.1.S1_at--442--5231Chr01:40834295..40834319 (25 bp)
GAATAATTCTTTGCCTGTTCCTTCC
LOC_Os01g70020
Target Sequence 
GTGATGGTCGCTTGTGTTAGTGTTATGGATGCAGGACTTTCTAGCCCAACATTGCCGTTTGGGCTGTGTTGGGTCTGTAC
AATGAGGGCACCGCAACAATGAACTGGTGACCTGGGGGTAGTACAAGGTTGTTAACAATTTGATAGCCACACACACCTAG
TTGTTGTGCTTGACTTTGGTGTGACTTGTAGTCTAGTTGCTGGTCATGTACAATAGCTGTGCTGTTATAACTTTGCTTAG
GTAGCTAGCCTGACTGTAATATGCAGAATAATTCTTTGCCTGTTCCTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18596.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis