Browse Element(s) Details


Os.18676.1.S1_x_at

Description gb:AK101666.1
DB_XREF= gi:32986875
TID=Os.18676.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18676 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033057N11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033057N11, full insert sequence.
FL= gb:AK101666.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g010402/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01010Os.24643.1.S1_at11/111+1..7364RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os01g01020NANA1+8174..9019cytochrome P450 family protein, putative
LOC_Os01g01030Os.33183.1.S1_at11/111+9523..12619Monocopper oxidase precursor, putative, expressed
LOC_Os01g01030Os.33183.2.S1_at10/111+9523..12619Monocopper oxidase precursor, putative, expressed
LOC_Os01g01040Os.27571.1.S1_at11/111+13123..17122expressed protein
LOC_Os01g01040Os.18676.1.S1_x_at2/111+13123..17122expressed protein
LOC_Os01g01050Os.27637.1.S1_at11/111+19643..23696R3H domain containing protein, expressed
LOC_Os01g01050Os.51208.1.S1_s_at1/111+19643..23696R3H domain containing protein, expressed
LOC_Os01g01060Os.4725.1.S1_at11/111+23940..2543740S ribosomal protein S5, putative, expressed
LOC_Os01g01070Os.26562.1.S1_at11/111+26620..31295expressed protein
LOC_Os01g01070Os.46612.1.S1_x_at9/111+26620..31295expressed protein
LOC_Os01g01080Os.21356.1.S1_at11/111+32416..37981Sphingosine-1-phosphate lyase, putative, expressed
LOC_Os01g01090NANA1+41397..44328retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18676.1.S1_x_at--595--3271Chr12:2239432..2239456 (25 bp)
CAACAGTGACTTTGCCTTCGGGCAT
NONE
Os.18676.1.S1_x_at--326--7371Chr12:2239427..2239451 (25 bp)
GTGACTTTGCCTTCGGGCATAGTAA
NONE
Os.18676.1.S1_x_at--1067--8551Chr12:2239328..2239352 (25 bp)
TGGATGGATGACGTCGGCGTCTTTT
NONE
Os.18676.1.S1_x_at--986--4398Chr05:8356073..8356579 (25 bp)
GCCAGCTGTCGATGTAAAACGTACA
NONE
Os.18676.1.S1_x_at--1021--7031Chr12:2239103..2239127 (25 bp)
GTAAAACGTACATCCTTTCTGCCAG
NONE
Os.18676.1.S1_x_at--1093--102711Chr05:8356073..8356092 (20 bp)
TTTCTGCCAGCTGTCGATGTAAAAC
NONE
Os.18676.1.S1_x_at--744--10551Chr12:2239061..2239085 (25 bp)
TTCTTGTAACTTTTTCTTTCCATCT
NONE
Os.18676.1.S1_x_at--806--3651Chr12:2239052..2239076 (25 bp)
CTTTTTCTTTCCATCTTAATTACAT
NONE
Os.18676.1.S1_x_at--759--7811NONE
GGTCATTCCGGCAATATAAATGGGC
NONE
Os.18676.1.S1_x_at--883--71NONE
ATTCCGGCAATATAAATGGGCACAG
NONE
Os.18676.1.S1_x_at--132--2291NONE
AAATGGGCACAGCATTATGTTTTTT
NONE
Target Sequence 
CAACAGTGACTTTGCCTTCGGGCATAGTAACCCTCTTGAGGGCACTGTTGAGGTATCCCTCCTCCCTCGGCAAGGAGCTC
TGGGTGAAAACCTTGTCCAGTCTTTGGATGGATGACGTCGGCGTCTTTTGGCGTCGTGACCCTCGTGAGGGCGTTGTTTT
GGAGTCTTCGTGTCGTAGTGGTGTCGTTAGCTCGGTGGCGATCGGTCTCGCATAGTGATGGCCGGTTCGGTGCTTGGCTT
TCCTCTCTGTAGTGTGTGTTTGGACGGTTGACACATGGTTTGGGGCGTGTGCTCTGGTGCACATCCTTTCTCGACAGCCA
GCTGTCGATGTAAAACGTACATCCTTTCTGCCAGCTGTCGATGTAAAACTTTTCTTGTAACTTTTTCTTTCCATCTTAAT
TACATTGAANGNCCTTTGAATGACCTCCTTTGGTCATTCCGGCAATATAAATGGGCACAGCATTATGTTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18676.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis