Browse Element(s) Details


Os.33183.1.S1_at

Description gb:AK101455.1
DB_XREF= gi:32986664
TID=Os.33183.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.33183 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative pollen-specific protein homolog (P0672D08.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033040A20, full insert sequence.
FL= gb:AK101455.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0103011/11Monocopper oxidase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01010Os.24643.1.S1_at11/111+1..7364RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os01g01020NANA1+8174..9019cytochrome P450 family protein, putative
LOC_Os01g01030Os.33183.1.S1_at11/111+9523..12619Monocopper oxidase precursor, putative, expressed
LOC_Os01g01030Os.33183.2.S1_at10/111+9523..12619Monocopper oxidase precursor, putative, expressed
LOC_Os01g01040Os.27571.1.S1_at11/111+13123..17122expressed protein
LOC_Os01g01040Os.18676.1.S1_x_at2/111+13123..17122expressed protein
LOC_Os01g01050Os.27637.1.S1_at11/111+19643..23696R3H domain containing protein, expressed
LOC_Os01g01050Os.51208.1.S1_s_at1/111+19643..23696R3H domain containing protein, expressed
LOC_Os01g01060Os.4725.1.S1_at11/111+23940..2543740S ribosomal protein S5, putative, expressed
LOC_Os01g01070Os.26562.1.S1_at11/111+26620..31295expressed protein
LOC_Os01g01070Os.46612.1.S1_x_at9/111+26620..31295expressed protein
LOC_Os01g01080Os.21356.1.S1_at11/111+32416..37981Sphingosine-1-phosphate lyase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009932biological_processcell tip growth
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0031225cellular_componentanchored to membrane
GO:0046658cellular_componentanchored to plasma membrane
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33183.1.S1_at--267--8071Chr01:12068..12092 (25 bp)
GGAGCAATCGCATAGATTCCAATAC
LOC_Os01g01030
Os.33183.1.S1_at--815--71Chr01:12083..12107 (25 bp)
ATTCCAATACTCAGAAGCTTCTCAG
LOC_Os01g01030
Os.33183.1.S1_at--864--1551Chr01:12098..12122 (25 bp)
AGCTTCTCAGATAACGCAGCTGTGG
LOC_Os01g01030
Os.33183.1.S1_at--1107--811Chr01:12143..12167 (25 bp)
ATGGTTGGCCCTTTGGTAGAGCTTA
LOC_Os01g01030
Os.33183.1.S1_at--15--5931Chr01:12161..12185 (25 bp)
GAGCTTAATTAGATCTGTCTGCTGG
LOC_Os01g01030
Os.33183.1.S1_at--208--4831Chr01:12206..12230 (25 bp)
GCTCAGAGCTGGTCCCAAACATGGA
LOC_Os01g01030
Os.33183.1.S1_at--64--1591Chr01:12233..12257 (25 bp)
AGCTCTCAGCTCAAGTTAGTAGGGT
LOC_Os01g01030
Os.33183.1.S1_at--346--2071Chr01:12293..12317 (25 bp)
ACTTGAGTGATGATCCTGTCTGGGA
LOC_Os01g01030
Os.33183.1.S1_at--158--5351Chr01:12422..12446 (25 bp)
GAAGATCAACTTACTACCCAAACCT
LOC_Os01g01030
Os.33183.1.S1_at--654--5811Chr01:12482..12506 (25 bp)
GACCTGAAGCTTCTTGGGTTTTCCT
LOC_Os01g01030
Os.33183.1.S1_at--859--3571Chr01:12515..12539 (25 bp)
CATTTGTTGGTGGTTACGGTATCCT
LOC_Os01g01030
Target Sequence 
GGAGCAATCGCATAGATTCCAATACTCAGAAGCTTCTCAGATAACGCAGCTGTGGAAGATGGTTTTCTTCATGGCATGGT
TGGCCCTTTGGTAGAGCTTAATTAGATCTGTCTGCTGGGGTGATCCGGAGACGAGANNAGCTCAGAGCTGGTCCCAAACA
TGGATGAGCTCTCAGCTCAAGTTAGTAGGGTGGTGAATTTTGTCAGATTCNAATTGGTTANATTGGACTTGAGTGATGAT
CCTGTCTGGGAAGGGCAAAGAGTANGAGGAAGCATNGGGAANGCATACACACGCTTGACTNGATTTGGCTTGAAGTCGAN
CTAGCANGTTGCTCATTANCCGTTGNGTGATATCTGAAGATCAACTTACTACCCAAACCTAGACTCACAGAAACCAATTG
ATTGATATGGATTAAGACCTGAAGCTTCTTGGGTTTTCCTAAGTAATCCATTTGTTGGTGGTTACGGTATCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33183.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis