Browse Element(s) Details


Os.4725.1.S1_at

Description gb:AK121523.1
DB_XREF= gi:37991146
TID=Os.4725.1
CNT=37
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4725 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative 40S ribosomal protein S5 (P0672D08.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033028P14, full insert sequence.
FL= gb:AK059844.1 gb:AK121523.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0106011/1140S ribosomal protein S5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01010Os.24643.1.S1_at11/111+1..7364RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os01g01020NANA1+8174..9019cytochrome P450 family protein, putative
LOC_Os01g01030Os.33183.1.S1_at11/111+9523..12619Monocopper oxidase precursor, putative, expressed
LOC_Os01g01030Os.33183.2.S1_at10/111+9523..12619Monocopper oxidase precursor, putative, expressed
LOC_Os01g01040Os.27571.1.S1_at11/111+13123..17122expressed protein
LOC_Os01g01040Os.18676.1.S1_x_at2/111+13123..17122expressed protein
LOC_Os01g01050Os.27637.1.S1_at11/111+19643..23696R3H domain containing protein, expressed
LOC_Os01g01050Os.51208.1.S1_s_at1/111+19643..23696R3H domain containing protein, expressed
LOC_Os01g01060Os.4725.1.S1_at11/111+23940..2543740S ribosomal protein S5, putative, expressed
LOC_Os01g01070Os.26562.1.S1_at11/111+26620..31295expressed protein
LOC_Os01g01070Os.46612.1.S1_x_at9/111+26620..31295expressed protein
LOC_Os01g01080Os.21356.1.S1_at11/111+32416..37981Sphingosine-1-phosphate lyase, putative, expressed
LOC_Os01g01090NANA1+41397..44328retrotransposon protein, putative, unclassified
LOC_Os01g01100NANA1+44658..50214retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0000312cellular_componentplastid small ribosomal subunit
GO:0005840cellular_componentribosome
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4725.1.S1_at--753--2611Chr01:24406..24430 (25 bp)
AACCCCATCCAGGTCATCGTAGATG
LOC_Os01g01060
Os.4725.1.S1_at--396--6951Chr01:24424..24896 (25 bp)
GTAGATGCCATCATCAACAGCGGCC
LOC_Os01g01060
Os.4725.1.S1_at--139--4531Chr01:24894..24918 (25 bp)
GCCCGCGTGAGGACGCAACCCGTAT
LOC_Os01g01060
Os.4725.1.S1_at--950--1831Chr01:24906..24930 (25 bp)
ACGCAACCCGTATCGGCTCTGCTGG
LOC_Os01g01060
Os.4725.1.S1_at--550--1951Chr01:25001..25025 (25 bp)
ACTGGCGCCAGGGAGAGTGCCTTTA
LOC_Os01g01060
Os.4725.1.S1_at--669--8371Chr01:25209..25233 (25 bp)
GGCGAACCGTTGAGTGCTGAACCCA
LOC_Os01g01060
Os.4725.1.S1_at--27--8991Chr01:25226..25250 (25 bp)
TGAACCCATCTCAGTGTGCTCGAGC
LOC_Os01g01060
Os.4725.1.S1_at--473--1111Chr01:25238..25262 (25 bp)
AGTGTGCTCGAGCTATTGCCTTGCA
LOC_Os01g01060
Os.4725.1.S1_at--1073--9191Chr01:25267..25291 (25 bp)
TGCCAGTACTTTTTGCTAGTCTTTT
LOC_Os01g01060
Os.4725.1.S1_at--216--10691Chr01:25279..25303 (25 bp)
TTGCTAGTCTTTTTGGGCTTTGCCA
LOC_Os01g01060
Os.4725.1.S1_at--567--7511Chr01:25293..25317 (25 bp)
GGGCTTTGCCAGAGTTACCTGTGAT
LOC_Os01g01060
Target Sequence 
AACCCCATCCAGGTCATCGTAGATGCCATCATCAACAGCGGCCCGCGTGAGGACGCAACCCGTATCGGCTCTGCTGGCGC
TGTGAGGAGGCAGGCTGTGGATATCTCTCCCTTGAGGAGGGTCAACCAGGCAATCTACCTCCTCACCACTGGCGCCAGGG
AGAGTGCCTTTAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGATGAGCTCATCAATGCCGCCANNAGGGCTCATCCA
ACAGCTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCGTTGAGTGCTGAACCCATCTCAGTGT
GCTCGAGCTATTGCCTTGCACTGTTGCCAGTACTTTTTGCTAGTCTTTTTGGGCTTTGCCAGAGTTACCTGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4725.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis