Browse Element(s) Details


Os.27637.1.S1_at

Description gb:AK121362.1
DB_XREF= gi:37990985
TID=Os.27637.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.27637 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023124E16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023124E16, full insert sequence.
FL= gb:AK121362.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0105011/11R3H domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01010Os.24643.1.S1_at11/111+1..7364RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os01g01020NANA1+8174..9019cytochrome P450 family protein, putative
LOC_Os01g01030Os.33183.1.S1_at11/111+9523..12619Monocopper oxidase precursor, putative, expressed
LOC_Os01g01030Os.33183.2.S1_at10/111+9523..12619Monocopper oxidase precursor, putative, expressed
LOC_Os01g01040Os.27571.1.S1_at11/111+13123..17122expressed protein
LOC_Os01g01040Os.18676.1.S1_x_at2/111+13123..17122expressed protein
LOC_Os01g01050Os.27637.1.S1_at11/111+19643..23696R3H domain containing protein, expressed
LOC_Os01g01050Os.51208.1.S1_s_at1/111+19643..23696R3H domain containing protein, expressed
LOC_Os01g01060Os.4725.1.S1_at11/111+23940..2543740S ribosomal protein S5, putative, expressed
LOC_Os01g01070Os.26562.1.S1_at11/111+26620..31295expressed protein
LOC_Os01g01070Os.46612.1.S1_x_at9/111+26620..31295expressed protein
LOC_Os01g01080Os.21356.1.S1_at11/111+32416..37981Sphingosine-1-phosphate lyase, putative, expressed
LOC_Os01g01090NANA1+41397..44328retrotransposon protein, putative, unclassified
LOC_Os01g01100NANA1+44658..50214retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27637.1.S1_at--529--1331Chr01:23120..23144 (25 bp)
AGAGGATGTTTGTGCATGCCCTGCG
LOC_Os01g01050
Os.27637.1.S1_at--727--9151Chr01:23136..23160 (25 bp)
TGCCCTGCGGCTGCCTGGTGTTGAA
LOC_Os01g01050
Os.27637.1.S1_at--135--2971Chr01:23242..23266 (25 bp)
AATGGCAACTCTGTGATGATTTTCA
LOC_Os01g01050
Os.27637.1.S1_at--448--10331Chr01:23262..23286 (25 bp)
TTTCATCTGGTGATACTATGCTGGT
LOC_Os01g01050
Os.27637.1.S1_at--49--5291Chr01:23300..23324 (25 bp)
GAAGGCCTGGTATCCCTTGGTGGAA
LOC_Os01g01050
Os.27637.1.S1_at--722--9991Chr01:23425..23449 (25 bp)
TAGCTGCTTGCCGATGGCAGCAGTT
LOC_Os01g01050
Os.27637.1.S1_at--1014--10211Chr01:23457..23481 (25 bp)
TATTGAGTGCAATTGACAGGTCTTT
LOC_Os01g01050
Os.27637.1.S1_at--408--5411Chr01:23507..23531 (25 bp)
GAAGCTGCAGTTTAGCAGGTCCTTA
LOC_Os01g01050
Os.27637.1.S1_at--1037--4991Chr01:23521..23545 (25 bp)
GCAGGTCCTTATTTTCGTCAGAAGT
LOC_Os01g01050
Os.27637.1.S1_at--1081--2311Chr01:23627..23651 (25 bp)
AAAGAACTTTGTGTAGCCTATTTGG
LOC_Os01g01050
Os.27637.1.S1_at--326--6971Chr01:23639..23663 (25 bp)
GTAGCCTATTTGGATGGTTTCAGAC
LOC_Os01g01050
Target Sequence 
AGAGGATGTTTGTGCATGCCCTGCGGCTGCCTGGTGTTGAAGGAAGTGATGGTCCGGTGCGGAAAGGCAAGTAAGAGTCG
AGTTGAGATGGGAGGTGTAATGTAGGTATTAGGATGGAGTGAAATGGCAACTCTGTGATGATTTTCATCTGGTGATACTA
TGCTGGTATAAGATGAGATGGAAGGCCTGGTATCCCTTGGTGGAAGAAGTTGAAGCGCAAAATGCAATGCTGGGGATATG
CAAGTGGAAGAAGTTGAAGCGCAAAATGCAATGCTGGGGGATATGCAAGTGGAAGTGGTGAGAGCTAGCTGCTTGCCGAT
GGCAGCAGTTGTGGCAATATTGAGTGCAATTGACAGGTCTTTGTTTGTTTTGTTTTTTTTTTTTGCCAGAAGCTGCAGTT
TAGCAGGTCCTTATTTTCGTCAGAAGTTACAAAGAGAGAATATGCCAATTTTTAGCTTTATATTTTGCTGAAGGCAGACA
AGTTGTAGAGGAATATGCTGATCCTTAGAAAGAACTTTGTGTAGCCTATTTGGATGGTTTCAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27637.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis