Browse Element(s) Details


Os.18677.1.S1_at

Description gb:CB673400
DB_XREF= gi:29677125
DB_XREF=OSJNEe07O12.r
CLONE=OSJNEe07O12
TID=Os.18677.1
CNT=24
FEA=FLmRNA
TIER=Stack
STK=7
UG=Os.18677 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023083D22, full insert sequence
FL= gb:AK071239.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g367409/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36680Os.8220.1.S1_at10/112+22134763..22136125expressed protein
LOC_Os02g36690OsAffx.12376.1.S1_x_at9/112+22138388..22139129hypothetical protein
LOC_Os02g36690OsAffx.12376.1.S1_at6/112+22138388..22139129hypothetical protein
LOC_Os02g36690Os.52986.1.S2_at1/112+22138388..22139129hypothetical protein
LOC_Os02g36700Os.26352.1.S1_at11/112+22140560..22144278sucrose transporter BoSUT1, putative, expressed
LOC_Os02g36710Os.6793.1.S1_at11/112+22145697..22150173Nucleosome assembly protein containing protein, expressed
LOC_Os02g36720OsAffx.2884.1.S1_at10/112+22151324..22152489hypothetical protein
LOC_Os02g36730OsAffx.2885.1.S1_at11/112+22155458..22155790hypothetical protein
LOC_Os02g36740Os.18677.1.S1_at9/112+22157430..22161437zinc finger family protein, putative, expressed
LOC_Os02g36749NANA2+22163468..22164283hypothetical protein
LOC_Os02g36760OsAffx.12377.1.S1_at7/112+22166797..22167042hypothetical protein
LOC_Os02g36770OsAffx.24601.1.S1_at11/112+22168446..22172832Galactosyltransferase family protein, expressed
LOC_Os02g36780NANA2+22174302..22175150mTERF family protein, expressed
LOC_Os02g36790NANA2+22178949..22183425retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18677.1.S1_at--509--2191Chr02:22159188..22159212 (25 bp)
ACAAACAACAATGCTGCTGCCTTTT
LOC_Os02g36740
Os.18677.1.S1_at--23--10711NONE
TTGCCGCTCCATATTTCTAATTCTA
NONE
Os.18677.1.S1_at--588--8471Chr02:22158930..22158954 (25 bp)
TGGCTCTTCTACTCTTAAGGCATAC
LOC_Os02g36740
Os.18677.1.S1_at--424--691NONE
ATGACGCATCTGCTATTTTCTCGTT
NONE
Os.18677.1.S1_at--1047--3771Chr02:22158684..22158705 (22 bp)
CTCGTTGTTTCTTTTGAGGGCTGCT
LOC_Os02g36740
Os.18677.1.S1_at--40--7591Chr02:22158628..22158652 (25 bp)
GGGCTATTAGTATCATGCAACGTCA
LOC_Os02g36740
Os.18677.1.S1_at--72--8511Chr02:22157950..22157974 (25 bp)
TGGCAATCATACTCCACCGAAATGG
LOC_Os02g36740
Os.18677.1.S1_at--958--951Chr02:22157924..22157948 (25 bp)
AGGACTATGCAATTCGCCGTAGCGC
LOC_Os02g36740
Os.18677.1.S1_at--573--8951Chr02:22157796..22157820 (25 bp)
TGACTCTGTGTACACTGCAAGCCGG
LOC_Os02g36740
Os.18677.1.S1_at--1015--2311Chr02:22157734..22157758 (25 bp)
AAAGTGTTGCGTGTCTATCTCTCGA
LOC_Os02g36740
Os.18677.1.S1_at--611--10831Chr02:22157675..22157699 (25 bp)
TTGTGATTGGCTTTCAGCTTCTTCT
LOC_Os02g36740
Target Sequence 
ACAAACAACAATGCTGCTGCCTTTTGCCGCTCCATATTTCTAATTCTAATGGCTCTTCTACTCTTAAGGCATACACTAAC
CATTACTAGTAGTGATGATGAAGATGACGCATCTGCTATTTTCTCGTTGTTTCTTTTGAGGGCTGCTGGATTTTTGCTGC
CATGCTATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGACAAAGACAGGAAGAAGCAATGCTTCTACCAACT
GAAGTGGCAATCATACTCCACCGAAATGGAAGGACTATGCAATTCGCCGTAGCGCCAGAATCTCCTACCACACCTCATCC
AGAACAAGGGCAATAGAATTTGCTGGCAACAGGCATATCTTGTGAGTGCATACAAGATACCTTGAGCCTTCTACACCCTG
ACTCTGTGTACACTGCAAGCCGGTTGCACCAGCCACTTTCAATGGCCAAATTGCAGCAAAAAAGTGTTGCGTGTCTATCT
CTCGATTTGCATAAACTTTGCAGCTAGGCTTGAATGCTTTTGTGATTGGCTTTCAGCTTCTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18677.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis