Browse Element(s) Details


Os.18687.1.S1_a_at

Description gb:AK102962.1
DB_XREF= gi:32988171
TID=Os.18687.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18687 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033115I05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033115I05, full insert sequence.
FL= gb:AK102962.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4742011/11pollen-specific kinase partner protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47390Os.18947.1.S1_at11/112+28922837..28926136expressed protein
LOC_Os02g47390Os.54282.1.S1_x_at2/112+28922837..28926136expressed protein
LOC_Os02g47390Os.51925.1.S1_at1/112+28922837..28926136expressed protein
LOC_Os02g47400Os.52664.1.S1_at11/112+28929567..28933388pectinacetylesterase family protein, putative, expressed
LOC_Os02g47410Os.17381.1.S1_at11/112+28933917..28942098Protein kinase domain containing protein, expressed
LOC_Os02g47420Os.18687.1.S1_a_at11/112+28947167..28953256pollen-specific kinase partner protein, putative, expressed
LOC_Os02g47430Os.55138.1.S1_x_at3/112+28958585..28959349expressed protein
LOC_Os02g47440Os.20822.1.A1_at11/112+28961714..28966120SNARE domain containing protein, expressed
LOC_Os02g47440OsAffx.24766.1.S1_at9/112+28961714..28966120SNARE domain containing protein, expressed
LOC_Os02g47450Os.7506.1.S1_at11/112+28972783..28974546expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005089molecular_functionRho guanyl-nucleotide exchange factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18687.1.S1_a_at--1139--6651Chr02:28947878..28947902 (25 bp)
GTTGAAACACTTATGCAGCTTCTGA
LOC_Os02g47420
Os.18687.1.S1_a_at--256--3531Chr02:28947625..28947649 (25 bp)
CATGCCATTGTGGAGGCCTACTCAA
LOC_Os02g47420
Os.18687.1.S1_a_at--932--7711Chr02:28947588..28947612 (25 bp)
GGGTGGCATTCAGCATACTGTCCAG
LOC_Os02g47420
Os.18687.1.S1_a_at--181--9931Chr02:28947573..28947597 (25 bp)
TACTGTCCAGGGTAGCAGAGATTCT
LOC_Os02g47420
Os.18687.1.S1_a_at--871--6571Chr02:28947554..28947578 (25 bp)
GATTCTGCTGGAAGATGACCTGATC
LOC_Os02g47420
Os.18687.1.S1_a_at--1088--2091Chr02:28947441..28947465 (25 bp)
ACATCCGGCGGTCGCTGATGGACCA
LOC_Os02g47420
Os.18687.1.S1_a_at--489--5411Chr02:28947336..28947360 (25 bp)
GAAGCTGTGAAGTTTTTCTTTTTGG
LOC_Os02g47420
Os.18687.1.S1_a_at--1134--10551Chr02:28947321..28947345 (25 bp)
TTCTTTTTGGCAGTTGTACAGGGTT
LOC_Os02g47420
Os.18687.1.S1_a_at--76--9171Chr02:28947273..28947297 (25 bp)
TGCGCGCTGGCTGGCTACATAAAGT
LOC_Os02g47420
Os.18687.1.S1_a_at--565--2791Chr02:28947243..28947267 (25 bp)
AAGTTCACCTTGCTAATACGTCCTG
LOC_Os02g47420
Os.18687.1.S1_a_at--615--311Chr02:28947228..28947252 (25 bp)
ATACGTCCTGTATGGAACGGGCTAA
LOC_Os02g47420
Target Sequence 
GTTGAAACACTTATGCAGCTTCTGAAATCCAGATTCCCGAGNCTTCCTCCANCTTTTATANGAANTTGTNAAGATCCANT
ACAATGTGGACNTGGGGCATGCCATTGTGGAGGCCTACTCAANGGTTCTTGTTGGGGTGGCATTCAGCATACTGTCCAGG
GTAGCAGAGATTCTGCTGGAAGATGACCTGATCAAGAAGCCCAACACCCCTCTGGCCACACTCAAGTTCGACCTCTCCTC
CGACGTGTACCTCGCCGGCATCACCGAGACGCCGCCGGGCCACATCCGGCGGTCGCTGATGGACCAGATCAGCCTGGTCG
ACGGCAGCCTCGACGCGGTCGTCAGGAAGAAGGGGGTGAAGCAGCTTAGGTGGTGAAAAAGGACATGAAGCTGTGAAGTT
TTTCTTTTTGGCAGTTGTACAGGGTTTGTGATGATGATGCATGCTGTGCTGCGCGCTGGCTGGCTACATAAAGTTGGTTA
AGTTCACCTTGCTAATACGTCCTGTATGGAACGGGCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18687.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis