Browse Element(s) Details


Os.18732.1.S1_at

Description gb:AK065216.1
DB_XREF= gi:32975234
TID=Os.18732.1
CNT=24
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.18732 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002G08, full insert sequence.
FL= gb:AK065216.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0499011/11AMP-binding enzyme family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04950NANA12+2136931..2138890retrotransposon, putative, centromere-specific
LOC_Os12g04960OsAffx.19499.1.S1_at11/1112+2139895..2142972hypothetical protein
LOC_Os12g04970NANA12+2147803..2149470retrotransposon protein, putative, unclassified
LOC_Os12g04980Os.13051.1.S1_at11/1112+2152131..2157087Meiotic recombination protein DMC1 homolog, putative, expressed
LOC_Os12g04990Os.18732.1.S1_at11/1112+2160590..2169061AMP-binding enzyme family protein, expressed
LOC_Os12g05000OsAffx.31586.1.S1_s_at11/1112+2170700..2173955expressed protein
LOC_Os12g05010OsAffx.16205.1.S1_at2/1112+2175946..2177904hypothetical protein
LOC_Os12g05020OsAffx.31587.1.S1_at10/1112+2178172..2179893Protein GOS9, putative
LOC_Os12g05030OsAffx.31588.1.S1_at11/1112+2182964..2183687hypothetical protein
LOC_Os12g05040Os.7649.1.S1_at7/1112+2192737..2197849heavy metal-associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006633biological_processfatty acid biosynthesis
GO:0010143biological_processcutin biosynthesis
GO:0004467molecular_functionlong-chain-fatty-acid-CoA ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18732.1.S1_at--65--3851Chr12:2161593..2161612 (20 bp)
CTGCATCTGAGGGAATCCAGCACGA
LOC_Os12g04990
Os.18732.1.S1_at--1021--10491Chr12:2161338..2161362 (25 bp)
TTAAGACAGCTTTGTGCTGATCCGA
LOC_Os12g04990
Os.18732.1.S1_at--985--731Chr12:2160956..2160980 (25 bp)
ATGTATGCACAACTGCGCCAAGCAG
LOC_Os12g04990
Os.18732.1.S1_at--203--2631Chr12:2160922..2160946 (25 bp)
AACCTAAGCTGTAACTACCCGAGTG
LOC_Os12g04990
Os.18732.1.S1_at--1009--5131Chr12:2160876..2160900 (25 bp)
GCAACAAACTACAAATGACTGGCTT
LOC_Os12g04990
Os.18732.1.S1_at--560--5731Chr12:2160860..2160884 (25 bp)
GACTGGCTTGGTATAGTGAAGGCAA
LOC_Os12g04990
Os.18732.1.S1_at--1056--2551Chr12:2160837..2160861 (25 bp)
AACTGTGAATGAACTCTGTTGGATA
LOC_Os12g04990
Os.18732.1.S1_at--1028--7931Chr12:2160817..2160841 (25 bp)
GGATATGTCCACGAATGCTTGATAA
LOC_Os12g04990
Os.18732.1.S1_at--632--5231Chr12:2160766..2160790 (25 bp)
GAATAGCCTGTTTTATGTACATCTG
LOC_Os12g04990
Os.18732.1.S1_at--321--5271Chr12:2160694..2160718 (25 bp)
GAATCCATTGAATTTCACCTGACTA
LOC_Os12g04990
Os.18732.1.S1_at--153--5231Chr12:2160685..2160709 (25 bp)
GAATTTCACCTGACTATCATAGGAA
LOC_Os12g04990
Target Sequence 
CTGCATCTGAGGGAATCCAGCACGAGGATTTAAGACAGCTTTGTGCTGATCCGANAGCAAGATCTGCTGTCCTGGCTGAG
ATGGACTCTATTGGAAAGGAAGCACAGCTAAGAGGTTTTGAATTTGCCAAAGCTGTTACCCTTGTTGCTGAACCTTTCAC
ATTAGAAAATGGTCTCCTCACCCCAACTTTCAAGGTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAG
ATATGTATGCACAACTGCGCCAAGCAGAACAGATAAAACCTAAGCTGTAACTACCCGAGTGACAATCGGAGTAAAAGTTC
TAGCAACAAACTACAAATGACTGGCTTGGTATAGTGAAGGCAACTGTGAATGAACTCTGTTGGATATGTCCACGAATGCT
TGATAATCATCTAATAGGATGATCAGGTAAAAGAATAGCCTGTTTTATGTACATCTGTAAGATGAAATGAAAAAAGATGT
AGACATGTTAAATGTCATATATATGAATCCATTGAATTTCACCTGACTATCATAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18732.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis