Browse Element(s) Details


Os.18745.1.S1_at

Description gb:AK071234.1
DB_XREF= gi:32981257
TID=Os.18745.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18745 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative permease (OSJNBb0081B07.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023086K11, full insert sequence.
FL= gb:AK058223.1 gb:AK071234.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6088010/11Permease I, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60850Os.27063.1.S1_at11/113+34513269..34515907POT family protein, expressed
LOC_Os03g60870Os.12050.1.S1_a_at11/113+34532068..34535425Ras-related protein Rab11A, putative, expressed
LOC_Os03g60880Os.18745.1.S1_at10/113+34536291..34540141Permease I, putative, expressed
LOC_Os03g60890Os.20497.1.S1_at11/113+34542433..34544666calmodulin-binding protein, putative
LOC_Os03g60890Os.18942.2.S1_at3/113+34542433..34544666calmodulin-binding protein, putative
LOC_Os03g60900Os.6224.1.S1_at10/113+34546528..34547149expressed protein
LOC_Os03g60910Os.17149.1.S1_at11/113+34548697..34553294pentatricopeptide, putative, expressed
LOC_Os03g60910Os.17149.2.S1_x_at11/113+34548697..34553294pentatricopeptide, putative, expressed
LOC_Os03g60910OsAffx.20433.1.S1_x_at1/113+34548697..34553294pentatricopeptide, putative, expressed
LOC_Os03g60920Os.15547.1.S1_at11/113+34553529..34555886methylase family protein, expressed
LOC_Os03g60930NANA3+34557191..34564387RNA recognition motif family protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0015646molecular_functionpermease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18745.1.S1_at--1103--6651Chr03:34536957..34536981 (25 bp)
GTTGCAGGCTATGGCCCAGTACACA
LOC_Os03g60880
Os.18745.1.S1_at--420--1171Chr03:34536943..34536964 (22 bp)
AGTACACACTCACGCAAGATGGTTC
LOC_Os03g60880
Os.18745.1.S1_at--902--6451Chr03:34536816..34536840 (25 bp)
GATCAATGTGGTATTCTCGTCAAAA
LOC_Os03g60880
Os.18745.1.S1_at--337--2431Chr03:34536795..34536819 (25 bp)
AAAAGCATTCGTCGGAGGCGCTGTA
LOC_Os03g60880
Os.18745.1.S1_at--464--2831Chr03:34536629..34536653 (25 bp)
AAGTTCTTCCCATCCTTCTGATTTT
LOC_Os03g60880
Os.18745.1.S1_at--834--9031Chr03:34536605..34536629 (25 bp)
TGCACGCCAGTGTTTTGTATCAAAT
LOC_Os03g60880
Os.18745.1.S1_at--693--6571Chr03:34536526..34536550 (25 bp)
GATTGTTGTTTCTCCTAGTGTTTTT
LOC_Os03g60880
Os.18745.1.S1_at--42--331Chr03:34536501..34536525 (25 bp)
ATACTCCTGAGTTCTGAATCCTGCA
LOC_Os03g60880
Os.18745.1.S1_at--712--5251Chr03:34536486..34536510 (25 bp)
GAATCCTGCAGACCCCAGTGTAAAA
LOC_Os03g60880
Os.18745.1.S1_at--738--5031Chr03:34536319..34536343 (25 bp)
GCAGTTAAATCCTTTCAGCTGTGAT
LOC_Os03g60880
Os.18745.1.S1_at--821--3691Chr03:34536290..34536314 (25 bp)
CTATCTTGCTGATCTTCTCGTGGTA
NONE
Target Sequence 
GTTGCAGGCTATGGCCCAGTACACACTCACGCAAGATGGTTCAATGATATGATCAATGTGGTATTCTCGTCAAAAGCATT
CGTCGGAGGCGCTGTAGCATATTTGTTGGACAATACCCTCCAGAGGCATGACAGCACTGCCAGGAAGGACCGGGGGCACC
ATTTCTGGGACAGATTCAGGTCGTTCAGGACAGACCCACGCAGCGAGGAGTTCTACTCTCTGCCTTTCAACCTCAACAAG
TTCTTCCCATCCTTCTGATTTTGCACGCCAGTGTTTTGTATCAAATTGGGATAGCATTGTAGTACGATTAGTTCTTGGGT
AAGTAATTCTAGCATTGCCAGATTGTTGTTTCTCCTAGTGTTTTTATACTCCTGAGTTCTGAATCCTGCAGACCCCAGTG
TAAAACTATCTGAGGAAGGAGAAATGACTCGGTATTTTTGGGTGTATATTAGTTCGGATTAACAGTTAAATCAACAAACT
GAAAATGCCTAGTTTTTCTTCCCCCGAGGCTGTAATTTCANCTGTGATTTTACTATCTTCAGTGTAAGCAGTTAAATCCT
TTCAGCTGTGATTTCACTATCTTGCTGATCTTCTCGTGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18745.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis