Browse Element(s) Details


Os.18776.1.S1_at

Description gb:AK068750.1
DB_XREF= gi:32978773
TID=Os.18776.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18776 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013032K11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013158J24, full insert sequence.
FL= gb:AK068750.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4327011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43220OsAffx.15906.1.S1_at11/116+25976004..25979791Glossy15, putative, expressed
LOC_Os06g43230OsAffx.28075.1.S1_at11/116+25983228..25984174hypothetical protein
LOC_Os06g43240NANA6+25987882..25989057transposon protein, putative, unclassified
LOC_Os06g43250Os.55480.1.S1_at10/116+25989416..25992216cDNA sequence BC024814, putative, expressed
LOC_Os06g43260OsAffx.28077.1.S1_at11/116+25992669..25994758hypothetical protein
LOC_Os06g43270Os.18776.1.S1_at11/116+26002185..26006063Protein kinase domain containing protein, expressed
LOC_Os06g43280Os.55135.1.S1_at11/116+26006061..26009416elongator component, putative, expressed
LOC_Os06g43290Os.46785.2.S1_x_at4/116+26011705..26015703retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g43304Os.51066.1.S1_at11/116+26021270..26028243Cytochrome P450 family protein, expressed
LOC_Os06g43304OsAffx.21292.1.S1_at1/116+26021270..26028243Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18776.1.S1_at--279--891Chr06:26005470..26005494 (25 bp)
AGGCCGCTGTTCATTGCTGTAGGTT
LOC_Os06g43270
Os.18776.1.S1_at--487--1791Chr06:26005500..26005524 (25 bp)
ACCGCTCTGAAGCTAGGCATCTTTG
LOC_Os06g43270
Os.18776.1.S1_at--842--2851Chr06:26005550..26005574 (25 bp)
AAGTCGAAAGGTTGCCAGCGTCTCT
LOC_Os06g43270
Os.18776.1.S1_at--572--2391Chr06:26005655..26005679 (25 bp)
AAACATGCTGTTTAGAGACGGTCCT
LOC_Os06g43270
Os.18776.1.S1_at--960--5611Chr06:26005671..26005695 (25 bp)
GACGGTCCTACGCTTTCTGGATAAA
LOC_Os06g43270
Os.18776.1.S1_at--151--1391Chr06:26005778..26005802 (25 bp)
AGACCTGAAACTTGTCTTGCCACAA
LOC_Os06g43270
Os.18776.1.S1_at--857--10511Chr06:26005823..26005847 (25 bp)
TTCACTCTACTATCATCTCCATGTT
LOC_Os06g43270
Os.18776.1.S1_at--343--6931Chr06:26005883..26005907 (25 bp)
GTAGGCTTGCAGTCCAAATCCTGAT
LOC_Os06g43270
Os.18776.1.S1_at--239--9931Chr06:26005907..26005931 (25 bp)
TACTGTCTTTTGCTTTTGTCATTAC
LOC_Os06g43270
Os.18776.1.S1_at--769--1191Chr06:26005945..26005969 (25 bp)
AGTATCCCTGGATTTTCTGTTCCCG
LOC_Os06g43270
Os.18776.1.S1_at--558--9471Chr06:26005960..26005984 (25 bp)
TCTGTTCCCGATCCATCAATTTGCA
LOC_Os06g43270
Target Sequence 
AGGCCGCTGTTCATTGCTGTAGGTTTCTTCACCGCTCTGAAGCTAGGCATCTTTGTTGGGAAGGGCATTGCTCGGCCAAG
AAGTCGAAAGGTTGCCAGCGTCTCTGATCAGAGTGATCATCAGCAACTACAGCAGCAAGAAGTGCAAAACAATGCCAATG
CAGCATGGCTCCCTCCAACTGTGGCAAACATGCTGTTTAGAGACGGTCCTACGCTTTCTGGATAAAATGAAAATCAAAAC
CAGTGCAAGATGGAGAGTTTCAGAACTACTGGATAATGCAACGCCCAAGCAAATCGTAGTTCATACTTAGACCTGAAACT
TGTCTTGCCACAAGACCTGTAAATATTTCCACCTTCACTCTACTATCATCTCCATGTTCACAAAAACATGTTCTGTGCTT
ATGTCTGTAAATTGTAGGCTTGCAGTCCAAATCCTGATACTGTCTTTTGCTTTTGTCATTACACTGCANNNNNNCAGTAT
CCCTGGATTTTCTGTTCCCGATCCATCAATTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18776.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis