Browse Element(s) Details


Os.18856.1.S1_at

Description gb:AK105831.1
DB_XREF= gi:32991040
TID=Os.18856.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.18856 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-203-E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-203-E07, full insert sequence.
FL= gb:AK105831.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g020509/11Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthethase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02000Os.7584.1.S1_at11/114+608054..613392Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os04g02010OsAffx.25831.1.S1_at9/114+617964..618778hypothetical protein
LOC_Os04g02010OsAffx.25831.1.S1_x_at9/114+617964..618778hypothetical protein
LOC_Os04g02020OsAffx.13618.1.S1_at11/114+623838..624134hypothetical protein
LOC_Os04g02030OsAffx.25832.1.S1_at11/114+630343..633741NB-ARC domain containing protein
LOC_Os04g02040OsAffx.25833.1.S1_at11/114+634634..634948truncated rp1-4 protein, putative
LOC_Os04g02050Os.18856.1.S1_at9/114+636698..640221Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthethase 2, putative, expressed
LOC_Os04g02060OsAffx.25834.1.S1_at11/114+648010..648949hypothetical protein
LOC_Os04g02070Os.54121.1.S1_s_at11/114+651744..658081expressed protein
LOC_Os04g02070Os.54121.1.S2_s_at11/114+651744..658081expressed protein
LOC_Os04g02080Os.45212.1.S1_x_at7/114+661177..663165retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02090OsAffx.25156.4.S1_x_at11/114+664174..667203hypothetical protein
LOC_Os04g02090OsAffx.25156.1.S1_x_at4/114+664174..667203hypothetical protein
LOC_Os04g02090OsAffx.25156.5.S1_x_at3/114+664174..667203hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000103biological_processsulfate assimilation
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0004781molecular_functionsulfate adenylyltransferase (ATP) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18856.1.S1_at--174--9431NONE
TCGTGATCCTGCTGGAATGGGCCAT
NONE
Os.18856.1.S1_at--273--2331NONE
AAAGAAGGTCCTTAGCATGGCTCCA
NONE
Os.18856.1.S1_at--885--5531Chr04:637363..637387 (25 bp)
GAAACTCAACATATTGCCCTTCAAG
LOC_Os04g02050
Os.18856.1.S1_at--1041--9151Chr04:637236..637373 (25 bp)
TGCCCTTCAAGGTAGCAGCATATGA
LOC_Os04g02050
Os.18856.1.S1_at--102--3431Chr04:637067..637173 (25 bp)
CAGGAACCAAGATGCGGGCTTTTGC
LOC_Os04g02050
Os.18856.1.S1_at--650--6011Chr04:637034..637058 (25 bp)
GAGAGAACCCTCCTGACGGTTTCAT
LOC_Os04g02050
Os.18856.1.S1_at--849--10311Chr04:637015..637039 (25 bp)
TTTCATGTGCCCTGGTGGGTGGAAA
LOC_Os04g02050
Os.18856.1.S1_at--974--8131Chr04:636995..637019 (25 bp)
GGAAAGTTCTTGTGGACTACTACAA
LOC_Os04g02050
Os.18856.1.S1_at--940--8891Chr04:636913..636937 (25 bp)
TGAGATTGTTCAGTCGCGGCAGGCA
LOC_Os04g02050
Os.18856.1.S1_at--312--9351Chr04:636900..636924 (25 bp)
TCGCGGCAGGCACAAGATCTTCAGA
LOC_Os04g02050
Os.18856.1.S1_at--914--5591Chr04:636744..636768 (25 bp)
GAAATTCCATTGTCATTGTTCTGCA
LOC_Os04g02050
Target Sequence 
TCGTGATCCTGCTGGAATGGGCCATCCAACAGAGAAGAGGGATCTGTACAACCCAGATCATGGAAAGAAGGTCCTTAGCA
TGGCTCCAGGTTTAGAGAAACTCAACATATTGCCCTTCAAGGTAGCAGCATATGATACAGTGGCGAAGAAGATGGCNTTC
TTTGATCCTTCACGGAGTAAAGATTTTCTGTTCATCTCAGGAACCAAGATGCGGGCTTTTGCNAAAAGTGGAGAGAACCC
TCCTGACGGTTTCATGTGCCCTGGTGGGTGGAAAGTTCTTGTGGACTACTACAATAGTTTGCAAACNGAAGAAGCGGCTG
TGGCANACTGTATGAGAAANNCCTACTGGTTTGCTGAGATTGTTCAGTCGCGGCAGGCACAAGATCTTCAGATCTCTCAG
AGATATTTTTNTTTAGGTTGATATTGATTGATGCGATGAAATTGTTATTCCAATTCATCAANTTTTGTAATGTGGTATCA
TGAAGCTTGACATTNGANCTCACTAGTGCTGGGTAAATTGAGNTGAAATTCCATTGTCATTGTTCTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18856.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis