Browse Element(s) Details


Os.18926.1.S1_at

Description gb:AK068866.1
DB_XREF= gi:32978891
TID=Os.18926.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18926 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023001M15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023001M15, full insert sequence.
FL= gb:AK068866.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4484011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44810Os.54281.1.S1_at11/113+25222398..25227209SPX domain containing protein, expressed
LOC_Os03g44810OsAffx.29100.1.S1_at1/113+25222398..25227209SPX domain containing protein, expressed
LOC_Os03g44820Os.8552.1.S1_at10/113+25230628..25232697glutamyl-tRNA amidotransferase, C subunit family protein, expressed
LOC_Os03g44830Os.18753.1.S1_at11/113+25233636..25240504expressed protein
LOC_Os03g44840Os.18926.1.S1_at11/113+25251861..25256081expressed protein
LOC_Os03g44850NANA3+25258466..25258900hypothetical protein
LOC_Os03g44860OsAffx.25545.1.S1_at11/113+25264911..25265282hypothetical protein
LOC_Os03g44870NANA3+25267520..25268561expressed protein
LOC_Os03g44880OsAffx.25546.1.S1_s_at11/113+25269898..25271593Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os03g44890Os.47315.1.S1_x_at11/113+25280727..25284264C2 domain-containing protein, putative, expressed
LOC_Os03g44890Os.47315.1.S2_x_at11/113+25280727..25284264C2 domain-containing protein, putative, expressed
LOC_Os03g44890OsAffx.30059.2.S1_x_at1/113+25280727..25284264C2 domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18926.1.S1_at--710--6971Chr03:25252977..25253001 (25 bp)
GTAGCCATTTATTCATTTCTCATCG
LOC_Os03g44840
Os.18926.1.S1_at--1019--9731Chr03:25252369..25252393 (25 bp)
TAATTGCGTGGCCACAGGCTTGTGT
LOC_Os03g44840
Os.18926.1.S1_at--253--7631Chr03:25252295..25252319 (25 bp)
GGGACACTTATACCAGACCATCTGC
LOC_Os03g44840
Os.18926.1.S1_at--555--2451Chr03:25252234..25252258 (25 bp)
AAAATATTCGCCAGCGTGACCCTTG
LOC_Os03g44840
Os.18926.1.S1_at--1056--7371Chr03:25252219..25252243 (25 bp)
GTGACCCTTGCAGAGTTGCGCATTC
LOC_Os03g44840
Os.18926.1.S1_at--465--10711Chr03:25252204..25252228 (25 bp)
TTGCGCATTCTTCCCATTATATTGA
LOC_Os03g44840
Os.18926.1.S1_at--224--4311Chr03:25252166..25252190 (25 bp)
CCTTCAGCCATTTTTTCAGATTCCT
LOC_Os03g44840
Os.18926.1.S1_at--933--6511Chr03:25252130..25252154 (25 bp)
GATATTTCTATACTCTGCTGCTGTT
LOC_Os03g44840
Os.18926.1.S1_at--1021--8811Chr03:25252109..25252133 (25 bp)
TGTTGTTGCCGCTTATGAGTACTGC
LOC_Os03g44840
Os.18926.1.S1_at--275--10731Chr03:25251926..25251950 (25 bp)
TTGCTTGCCAGTTGCAGGTGCATTT
LOC_Os03g44840
Os.18926.1.S1_at--1121--10771Chr03:25251891..25251915 (25 bp)
TTGTTGATGCTTTTGCCGTTAGGCT
LOC_Os03g44840
Target Sequence 
GTAGCCATTTATTCATTTCTCATCGGTTATTACATGTGCCGAATGATAATTGCGTGGCCACAGGCTTGTGTTGCAACATA
TCATGTTGCATATGCAGAGAACCCACAGAACCCTCACCTGGGGACACTTATACCAGACCATCTGCGTGAGCTCCAAGCAC
TAGCAACGGACTGATCTCGTAAAAATATTCGCCAGCGTGACCCTTGCAGAGTTGCGCATTCTTCCCATTATATTGATGGT
TCTTCAATTCCTTCAGCCATTTTTTCAGATTCCTGCATCAGTGCAGATATTTCTATACTCTGCTGCTGTTGTTGCCGCTT
ATGAGTACTGCATATGNTACAGCAAATTNTTTGCGTGNCTCAGTTGTGTAGATATTGCATTAACCAAAAGAAAGATATTA
GATGATCTGAGACACCAAGACATATAGCTGTAGAGGAAATAGCACAGTGAACACATAAATAGAATGGNTATATTCATTTT
CGTGGATAATTGTTGCTTGCCAGTTGCAGGTGCATTTGCAGATGCGGTTGTTGATGCTTTTGCCGTTAGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18926.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis