Browse Element(s) Details


Os.18966.1.S1_a_at

Description gb:AK066783.1
DB_XREF= gi:32976801
TID=Os.18966.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18966 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033067A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013075O09, full insert sequence.
FL= gb:AK066783.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2539011/11Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g25340OsAffx.17145.1.S1_at10/118+15282192..15285240hypothetical protein
LOC_Os08g25350NANA8+15286027..15289348Transposable element protein, putative, MuDR
LOC_Os08g25360OsAffx.5922.1.S1_at11/118+15291319..15291645hypothetical protein
LOC_Os08g25370NANA8+15294777..15295628hypothetical protein
LOC_Os08g25380OsAffx.5923.1.S1_at11/118+15298796..15302440Serine/threonine-protein kinase BRI1-like 1 precursor, putative, expressed
LOC_Os08g25390Os.18966.1.S1_a_at11/118+15306511..15317764Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplast precursor, putative, expressed
LOC_Os08g25390Os.18966.2.S1_at11/118+15306511..15317764Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplast precursor, putative, expressed
LOC_Os08g25410OsAffx.29345.1.S1_at11/118+15323722..15328493hypothetical protein
LOC_Os08g25420OsAffx.17147.1.S1_at11/118+15341092..15341714expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008652biological_processamino acid biosynthesis
GO:0009067biological_processaspartate family amino acid biosynthesis
GO:0004412molecular_functionhomoserine dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18966.1.S1_a_at--313--3771Chr08:15309105..15309129 (25 bp)
CTCTACAACGTGCATCATATACCCA
LOC_Os08g25390
Os.18966.1.S1_a_at--601--7331Chr08:15309096..15309120 (25 bp)
GTGCATCATATACCCATTACTTCTA
LOC_Os08g25390
Os.18966.1.S1_a_at--1100--231Chr08:15309089..15309113 (25 bp)
ATATACCCATTACTTCTATGAAGCA
LOC_Os08g25390
Os.18966.1.S1_a_at--1070--8451Chr08:15309053..15309077 (25 bp)
TGGCCTTCCTATCATTAGCACTCTG
LOC_Os08g25390
Os.18966.1.S1_a_at--1022--10151Chr08:15309044..15309068 (25 bp)
TATCATTAGCACTCTGCGCGGTCTC
LOC_Os08g25390
Os.18966.1.S1_a_at--82--9151Chr08:15309030..15309054 (25 bp)
TGCGCGGTCTCCTGGAAACAGGTGA
LOC_Os08g25390
Os.18966.1.S1_a_at--23--7971Chr08:15308831..15309009 (25 bp)
GGATCTTCAGTGGAACATTGAGTTA
LOC_Os08g25390
Os.18966.1.S1_a_at--731--3231Chr08:15308783..15308807 (25 bp)
CAAGAGCTTTCAGTGATGTTGTTTC
LOC_Os08g25390
Os.18966.1.S1_a_at--129--3471Chr08:15308773..15308797 (25 bp)
CAGTGATGTTGTTTCTGAAGCAAAA
LOC_Os08g25390
Os.18966.1.S1_a_at--72--2431Chr08:15308752..15308776 (25 bp)
AAAAGAGGCTGGATACACTGAACCT
LOC_Os08g25390
Os.18966.1.S1_a_at--599--8851Chr08:15308716..15308740 (25 bp)
TGATCTGTCTGGAACTGATGTAGCC
LOC_Os08g25390
Target Sequence 
CTCTACAACGTGCATCATATACCCATTACTTCTATGAAGCAACTGTTGGTGCTGGCCTTCCTATCATTAGCACTCTGCGC
GGTCTCCTGGAAACAGGTGACAAGATATTGCGTATTGAGGGGATCTTCAGTGGAACATTGAGTTACATTTTNNACAATTT
TGAAGGAACAAGAGCTTTCAGTGATGTTGTTTCTGAAGCAAAAGAGGCTGGATACACTGAACCTNGATCCAAGAGATGAT
CTGTCTGGAACTGATGTAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18966.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis