Browse Element(s) Details


OsAffx.29345.1.S1_at

Description tigr:9636.m02493
TID=OsAffx.29345.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2541011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g25380OsAffx.5923.1.S1_at11/118+15298796..15302440Serine/threonine-protein kinase BRI1-like 1 precursor, putative, expressed
LOC_Os08g25390Os.18966.1.S1_a_at11/118+15306511..15317764Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplast precursor, putative, expressed
LOC_Os08g25390Os.18966.2.S1_at11/118+15306511..15317764Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplast precursor, putative, expressed
LOC_Os08g25410OsAffx.29345.1.S1_at11/118+15323722..15328493hypothetical protein
LOC_Os08g25420OsAffx.17147.1.S1_at11/118+15341092..15341714expressed protein
LOC_Os08g25430Os.17809.1.S1_at11/118+15343713..15350226Protein kinase domain containing protein, expressed
LOC_Os08g25430Os.57449.1.S1_x_at1/118+15343713..15350226Protein kinase domain containing protein, expressed
LOC_Os08g25440OsAffx.17148.1.S1_at11/118+15351518..15353290hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29345.1.S1_at--1066--3011Chr08:15325789..15325813 (25 bp)
AATGCGGTTGAGTACCTACTCGACC
LOC_Os08g25410
OsAffx.29345.1.S1_at--1114--8511Chr08:15325760..15325784 (25 bp)
TGGACTCCACTCTGAAGACGTGCTC
LOC_Os08g25410
OsAffx.29345.1.S1_at--785--10151Chr08:15325255..15325275 (21 bp)
TATCGCTCTGGCTCATTGGCAATAA
LOC_Os08g25410
OsAffx.29345.1.S1_at--721--2231Chr08:15325225..15325249 (25 bp)
ACAATCTTGAGCTGTGGCGGCTGGA
LOC_Os08g25410
OsAffx.29345.1.S1_at--53--3551Chr08:15325195..15325219 (25 bp)
CATCTCATGACCTCCATGTGGTTAA
LOC_Os08g25410
OsAffx.29345.1.S1_at--4--4351Chr08:15325182..15325206 (25 bp)
CCATGTGGTTAAGTACCTGCTCGAC
LOC_Os08g25410
OsAffx.29345.1.S1_at--701--9371Chr08:15325162..15325186 (25 bp)
TCGACCTCCTTGGACTTAACTATGA
LOC_Os08g25410
OsAffx.29345.1.S1_at--560--10491Chr08:15325147..15325171 (25 bp)
TTAACTATGAAGACGTGCTCCCAAT
LOC_Os08g25410
OsAffx.29345.1.S1_at--1124--9711Chr08:15324997..15325111 (25 bp)
TCAAGGTATTAGATTCCGGTCCAAT
LOC_Os08g25410
OsAffx.29345.1.S1_at--374--5171Chr08:15324168..15324192 (25 bp)
GCAAGCTCATGACATCTTTTACTTT
LOC_Os08g25410
OsAffx.29345.1.S1_at--1073--6931Chr08:15324095..15324119 (25 bp)
GTAGTTAAGTACATGCTCGACCGCC
LOC_Os08g25410
Target Sequence 
AATGCGGTTGAGTACCTACTCGACCGCCTTGGACTCCACTCTGAAGACGTGCTCCCGATTTATATCGCTCTGGCTCATTG
GCAATAATCTACACAATCTTGAGCTGTGGCGGCTGGAGGTGGCATCTCATGACCTCCATGTGGTTAAGTACCTGCTCGAC
CTCCTTGGACTTAACTATGAAGACGTGCTCCCAATTTATATTGGGGATGACACGACCGATGAGAATGCCTTCAAGGTATT
AGATTCCGGTCCAATTTATATCGGGGATGACACGACCGATGAGAATGCCTTCAAGGAAAAGTTACAGCAAGCTCATGACA
TCTTTTACTTTTATAAGGTTCACGAGATACATTTAAAGGATTCCCGAAACAAGGGAAATGTAGTTAAGTACATGCTCGAC
CGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29345.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis