Browse Element(s) Details


OsAffx.17148.1.S1_at

Description tigr:9636.m02496
TID=OsAffx.17148.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2544011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g25410OsAffx.29345.1.S1_at11/118+15323722..15328493hypothetical protein
LOC_Os08g25420OsAffx.17147.1.S1_at11/118+15341092..15341714expressed protein
LOC_Os08g25430Os.17809.1.S1_at11/118+15343713..15350226Protein kinase domain containing protein, expressed
LOC_Os08g25430Os.57449.1.S1_x_at1/118+15343713..15350226Protein kinase domain containing protein, expressed
LOC_Os08g25440OsAffx.17148.1.S1_at11/118+15351518..15353290hypothetical protein
LOC_Os08g25450OsAffx.5924.1.S1_at11/118+15358139..15358699hypothetical protein
LOC_Os08g25450OsAffx.5924.1.S1_x_at11/118+15358139..15358699hypothetical protein
LOC_Os08g25460Os.11904.1.S1_at11/118+15361445..15368999transcription initiation factor IIE, alpha subunit, putative, expressed
LOC_Os08g25470OsAffx.17149.1.S1_at11/118+15369335..15370678hypothetical protein
LOC_Os08g25480OsAffx.29346.1.S1_at11/118+15373015..15373850hypothetical protein
LOC_Os08g25490OsAffx.17150.1.S1_at11/118+15377583..15379272Reticuline oxidase precursor, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17148.1.S1_at--770--3011Chr08:15352063..15352087 (25 bp)
AATGCAGTGGCAGGTTCAGATTCAA
LOC_Os08g25440
OsAffx.17148.1.S1_at--794--2651Chr08:15351971..15351995 (25 bp)
AAGCCAACCGCCAAAAGATGCCGTT
LOC_Os08g25440
OsAffx.17148.1.S1_at--858--2771Chr08:15351957..15351981 (25 bp)
AAGATGCCGTTCAGGACAAGTCCCC
LOC_Os08g25440
OsAffx.17148.1.S1_at--449--5611Chr08:15351943..15351967 (25 bp)
GACAAGTCCCCTACGGAGCAAGATG
LOC_Os08g25440
OsAffx.17148.1.S1_at--21--2351Chr08:15351902..15351926 (25 bp)
AAAGAAATTGCTTGCGGCCTTGCTA
LOC_Os08g25440
OsAffx.17148.1.S1_at--402--8431Chr08:15351887..15351911 (25 bp)
GGCCTTGCTATCCTTTACAATGGTG
LOC_Os08g25440
OsAffx.17148.1.S1_at--650--5691Chr08:15351835..15351859 (25 bp)
GACTTCTCTAATGTTGCTCATGTGG
LOC_Os08g25440
OsAffx.17148.1.S1_at--111--3091Chr08:15351769..15351793 (25 bp)
AATAACGATGCCACAGCTGACTGTC
LOC_Os08g25440
OsAffx.17148.1.S1_at--1069--10291Chr08:15351729..15351753 (25 bp)
TTTCCTGTCAGGTGGCTATACTAGC
LOC_Os08g25440
OsAffx.17148.1.S1_at--10--5911Chr08:15351689..15351713 (25 bp)
GAGCTGCGCCAAGGACTTCAATGAA
LOC_Os08g25440
OsAffx.17148.1.S1_at--175--3091Chr08:15351575..15351599 (25 bp)
AATCAAGCCTGCTAGATCTCTCTCT
LOC_Os08g25440
Target Sequence 
AATGCAGTGGCAGGTTCAGATTCAAGCAACTATGCAGGTGCTGCGACAGAGGCGAGAGGAAGCGACTATTCTGCAATAGC
CAGAGATGAAGAAAGCCAACCGCCAAAAGATGCCGTTCAGGACAAGTCCCCTACGGAGCAAGATGATATACTATCTCAGG
AAAAGAAATTGCTTGCGGCCTTGCTATCCTTTACAATGGTGATATGCGAGAAACTGATTGATGCAGATGACTTCTCTAAT
GTTGCTCATGTGGACAGAGAACTGTTGAAGAAGCTGATAGAGATAATAGATGTAAATAACGATGCCACAGCTGACTGTCT
GAGAATAATGAAGCTTTCCTGTCAGGTGGCTATACTAGCAATTCAGCACAAACCGAGCTGCGCCAAGGACTTCAATGAAC
ATGATCGAAATCATGTACTGACCAAGGCTTCAGAGAACTTGTTAGAACTTGATAAATGCATGTTCTTTGCTGGTAATGAT
CATGAGGCAATCAAGCCTGCTAGATCTCTCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17148.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis