Browse Element(s) Details


OsAffx.17150.1.S1_at

Description tigr:9636.m02501
TID=OsAffx.17150.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=FAD binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2549011/11Reticuline oxidase precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g25440OsAffx.17148.1.S1_at11/118+15351518..15353290hypothetical protein
LOC_Os08g25450OsAffx.5924.1.S1_at11/118+15358139..15358699hypothetical protein
LOC_Os08g25450OsAffx.5924.1.S1_x_at11/118+15358139..15358699hypothetical protein
LOC_Os08g25460Os.11904.1.S1_at11/118+15361445..15368999transcription initiation factor IIE, alpha subunit, putative, expressed
LOC_Os08g25470OsAffx.17149.1.S1_at11/118+15369335..15370678hypothetical protein
LOC_Os08g25480OsAffx.29346.1.S1_at11/118+15373015..15373850hypothetical protein
LOC_Os08g25490OsAffx.17150.1.S1_at11/118+15377583..15379272Reticuline oxidase precursor, putative
LOC_Os08g25500NANA8+15384078..15384590transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g25510NANA8+15389138..15391059retrotransposon protein, putative, unclassified
LOC_Os08g25520NANA8+15393091..15395846retrotransposon protein, putative, unclassified
LOC_Os08g25530NANA8+15396511..15397944retrotransposon protein, putative, unclassified
LOC_Os08g25540NANA8+15400574..15402022retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
GO:0009055molecular_functionelectron carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17150.1.S1_at--627--1931Chr08:15378125..15378149 (25 bp)
ACGGAGGAGCTGACCAGCCGCGCCT
LOC_Os08g25490
OsAffx.17150.1.S1_at--310--8111Chr08:15378097..15378121 (25 bp)
GGACGAAGCACTACGCCAAGAGCAA
LOC_Os08g25490
OsAffx.17150.1.S1_at--780--2771Chr08:15378074..15378098 (25 bp)
AAGTCGGACTACGTGCGGTCGCCCA
LOC_Os08g25490
OsAffx.17150.1.S1_at--443--8731Chr08:15377911..15377935 (25 bp)
TGTACAGCGTCCAGTACGGCGTGAC
LOC_Os08g25490
OsAffx.17150.1.S1_at--842--9871Chr08:15377807..15377831 (25 bp)
TACATGGCGCCGCACGTGTCCAAGA
LOC_Os08g25490
OsAffx.17150.1.S1_at--853--4551Chr08:15377776..15377800 (25 bp)
GCGCCGCGTATGTCAACTACGTGGA
LOC_Os08g25490
OsAffx.17150.1.S1_at--589--10091Chr08:15377768..15377792 (25 bp)
TATGTCAACTACGTGGACCTCGACC
LOC_Os08g25490
OsAffx.17150.1.S1_at--301--4691Chr08:15377740..15377764 (25 bp)
GCACCAATGCTCTCGCCGGGAACGT
LOC_Os08g25490
OsAffx.17150.1.S1_at--259--3931Chr08:15377653..15377677 (25 bp)
CGGCGAACTTCGAACGGCTCGTCGG
LOC_Os08g25490
OsAffx.17150.1.S1_at--703--7551Chr08:15377629..15377653 (25 bp)
GGGCCAAGACGCTCATCGATCGTTC
LOC_Os08g25490
OsAffx.17150.1.S1_at--342--9391Chr08:15377614..15377638 (25 bp)
TCGATCGTTCCAACGTCTTCAGCAA
LOC_Os08g25490
Target Sequence 
ACGGAGGAGCTGACCAGCCGCGCCTCCAGGACGAAGCACTACGCCAAGAGCAAGTCGGACTACGTGCGGTCGCCCATCGC
GAGGGGCGCCGTGGCGGCGATCCTCCGGTACCTCGCCGGCGAGCCGGCGGGGTACGTGATCCTCGACCCCTACGGCGGCG
CCATGGCGCGTGAGGGGAGCGGCGACACGCCGTTCCCGCACCGCGCCGGCAACCTGTACAGCGTCCAGTACGGCGTGACG
TGGGAGGCCGGCGACGACGGCGGCGGCGGCGGCGGCGGCGGCGAGGCGCGCATGGCGTGGCTGCGGGCGCTGTACGCGTA
CATGGCGCCGCACGTGTCCAAGAACCCGCGCGCCGCGTATGTCAACTACGTGGACCTCGACCTCGGCACCAATGCTCTCG
CCGGGAACGTGTCCTCGCCGTCGTCGTCGGTGAGCCGAGCACGGTCGACGTGGGGCTCGGCGTACTTCTCGCCGGCGAAC
TTCGAACGGCTCGTCGGGGCCAAGACGCTCATCGATCGTTCCAACGTCTTCAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17150.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis