Browse Element(s) Details


Os.11904.1.S1_at

Description gb:AK067775.1
DB_XREF= gi:32977793
TID=Os.11904.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11904 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013118K08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013118K08, full insert sequence.
FL= gb:AK067775.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2546011/11transcription initiation factor IIE, alpha subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g25420OsAffx.17147.1.S1_at11/118+15341092..15341714expressed protein
LOC_Os08g25430Os.17809.1.S1_at11/118+15343713..15350226Protein kinase domain containing protein, expressed
LOC_Os08g25430Os.57449.1.S1_x_at1/118+15343713..15350226Protein kinase domain containing protein, expressed
LOC_Os08g25440OsAffx.17148.1.S1_at11/118+15351518..15353290hypothetical protein
LOC_Os08g25450OsAffx.5924.1.S1_at11/118+15358139..15358699hypothetical protein
LOC_Os08g25450OsAffx.5924.1.S1_x_at11/118+15358139..15358699hypothetical protein
LOC_Os08g25460Os.11904.1.S1_at11/118+15361445..15368999transcription initiation factor IIE, alpha subunit, putative, expressed
LOC_Os08g25470OsAffx.17149.1.S1_at11/118+15369335..15370678hypothetical protein
LOC_Os08g25480OsAffx.29346.1.S1_at11/118+15373015..15373850hypothetical protein
LOC_Os08g25490OsAffx.17150.1.S1_at11/118+15377583..15379272Reticuline oxidase precursor, putative
LOC_Os08g25500NANA8+15384078..15384590transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g25510NANA8+15389138..15391059retrotransposon protein, putative, unclassified
LOC_Os08g25520NANA8+15393091..15395846retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005673cellular_componenttranscription factor TFIIE complex
GO:0016986molecular_functiontranscription initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11904.1.S1_at--52--2311Chr08:15368502..15368526 (25 bp)
AAAGGCAGTCACAAATTCGTTAAAG
LOC_Os08g25460
Os.11904.1.S1_at--436--2331Chr08:15368523..15368547 (25 bp)
AAAGTAGTTCAATTTCATTCCAGGA
LOC_Os08g25460
Os.11904.1.S1_at--340--6311Chr08:15368555..15368579 (25 bp)
GATGAGCAATATCACCAACTGAACA
LOC_Os08g25460
Os.11904.1.S1_at--359--4931Chr08:15368711..15368735 (25 bp)
GCATTTTCTCCCCAAGATCCTTAAA
LOC_Os08g25460
Os.11904.1.S1_at--870--9551Chr08:15368771..15368795 (25 bp)
TCTTCAAGGGCCATGTGGGTGGAAT
LOC_Os08g25460
Os.11904.1.S1_at--648--10231Chr08:15368797..15368821 (25 bp)
TATTGTCGCAAAATCAGCTCTGTTT
LOC_Os08g25460
Os.11904.1.S1_at--49--9671Chr08:15368810..15368834 (25 bp)
TCAGCTCTGTTTTCAGTGAATGATC
LOC_Os08g25460
Os.11904.1.S1_at--164--5991Chr08:15368854..15368878 (25 bp)
GAGACTGTACGCTATGGCCATAAAC
LOC_Os08g25460
Os.11904.1.S1_at--1093--4431Chr08:15368881..15368905 (25 bp)
GCCATTTTTCAGATGTTCTTGCCAT
LOC_Os08g25460
Os.11904.1.S1_at--1022--6731Chr08:15368895..15368919 (25 bp)
GTTCTTGCCATGACCTGTATATTAT
LOC_Os08g25460
Os.11904.1.S1_at--345--6891Chr08:15368911..15368935 (25 bp)
GTATATTATGATGGCTATGCGCTAG
LOC_Os08g25460
Target Sequence 
AAAGGCAGTCACAAATTCGTTAAAGTAGTTCAATTTCATTCCAGGAATTGGATGATGAGCAATATCACCAACTGAACAAG
AAGCCAAGAAAAAGGCATGAAAAGCATTGCCACCAAAGAATTAGTTTGTATGGTTTGTTTGACCAAGGGAACTTTTCGGA
AGTGAAGCGTTTTCCTTTTAATAGCGAAAACATTTCCCAACCCCAGGCGGCATTTTCTCCCCAAGATCCTTAAAAAGCTA
CCATACTGTAAAGTATTATGCTATTGACATCTTCAAGGGCCATGTGGGTGGAATTTATTGTCGCAAAATCAGCTCTGTTT
TCAGTGAATGATCTTTTTTTTTTTTATGTTGTGAGACTGTACGCTATGGCCATAAACATGCCATTTTTCAGATGTTCTTG
CCATGACCTGTATATTATGATGGCTATGCGCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11904.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis