Browse Element(s) Details


Os.17809.1.S1_at

Description gb:AK099236.1
DB_XREF= gi:32984445
TID=Os.17809.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17809 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013106P03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013106P03, full insert sequence.
FL= gb:AK099236.1 gb:AK068357.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2543011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g25410OsAffx.29345.1.S1_at11/118+15323722..15328493hypothetical protein
LOC_Os08g25420OsAffx.17147.1.S1_at11/118+15341092..15341714expressed protein
LOC_Os08g25430Os.17809.1.S1_at11/118+15343713..15350226Protein kinase domain containing protein, expressed
LOC_Os08g25430Os.57449.1.S1_x_at1/118+15343713..15350226Protein kinase domain containing protein, expressed
LOC_Os08g25440OsAffx.17148.1.S1_at11/118+15351518..15353290hypothetical protein
LOC_Os08g25450OsAffx.5924.1.S1_at11/118+15358139..15358699hypothetical protein
LOC_Os08g25450OsAffx.5924.1.S1_x_at11/118+15358139..15358699hypothetical protein
LOC_Os08g25460Os.11904.1.S1_at11/118+15361445..15368999transcription initiation factor IIE, alpha subunit, putative, expressed
LOC_Os08g25470OsAffx.17149.1.S1_at11/118+15369335..15370678hypothetical protein
LOC_Os08g25480OsAffx.29346.1.S1_at11/118+15373015..15373850hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17809.1.S1_at--814--1531Chr08:15349646..15349670 (25 bp)
AGCATTGCGCAATGAGGCTCGAATT
LOC_Os08g25430
Os.17809.1.S1_at--361--6311Chr08:15349767..15349791 (25 bp)
GATGAGAAGATTGTAGCTGCCCCTA
LOC_Os08g25430
Os.17809.1.S1_at--264--6971Chr08:15349779..15349803 (25 bp)
GTAGCTGCCCCTAAGAAACCAGGTG
LOC_Os08g25430
Os.17809.1.S1_at--446--4031Chr08:15349829..15349853 (25 bp)
CGTAGAGTCAGGTGATCTTCTCCTT
LOC_Os08g25430
Os.17809.1.S1_at--461--5991Chr08:15349872..15349896 (25 bp)
GAGACTGCACATTGGTTCGCAAGCA
LOC_Os08g25430
Os.17809.1.S1_at--711--1511Chr08:15349893..15349917 (25 bp)
AGCAGCGGCGCTACTTGCAGTTCTA
LOC_Os08g25430
Os.17809.1.S1_at--182--5031Chr08:15349909..15349933 (25 bp)
GCAGTTCTACTGAGTTCACGGTGCC
LOC_Os08g25430
Os.17809.1.S1_at--154--3971Chr08:15349927..15349951 (25 bp)
CGGTGCCCCGGTGAGAAGAGATTTT
LOC_Os08g25430
Os.17809.1.S1_at--369--2691Chr08:15349962..15349986 (25 bp)
AAGCTGGTGGCTACTTAAGGTGCAA
LOC_Os08g25430
Os.17809.1.S1_at--614--8831Chr08:15350014..15350038 (25 bp)
TGATTATTCACAGCGTTGCAAGCAA
LOC_Os08g25430
Os.17809.1.S1_at--953--3891Chr08:15350182..15350206 (25 bp)
CTGTGGCATTTGCTTATGGGCGAAA
LOC_Os08g25430
Target Sequence 
AGCATTGCGCAATGAGGCTCGAATTGNTGAGATAACAAGCTGCATTCAGATAGCGTTGTTGTGTGTTCAGAAGGATCCGG
CTGACCGNCCTTCCATGTTGGATGTGCTTGCGATGNTAAGAGATGAGAAGATTGTAGCTGCCCCTAAGAAACCAGGTGAT
CTTCTCCTTGGAGACGAAACGAGCGTAGAGTCAGGTGATCTTCTCCTTGGAGAGGAAACGAGTGGAGAGACTGCACATTG
GTTCGCAAGCAGCGGCGCTACTTGCAGTTCTACTGAGTTCACGGTGCCCCGGTGAGAAGAGATTTTGTCATATTTGAAGC
TGGTGGCTACTTAAGGTGCAAGTACGTTATGTATAAAGCTATTACCTTTGATTATTCACAGCGTTGCAAGCAAAATAAGC
ATGGTGAATGTGTATTTCANANNNTGAGTAATTATGGATTTACCATATGTGATGGAAATAAATTAAACATACAGAAGGTG
GAATGTATAGTATATCATAAATATTTTAGACAAAATTGGCTACAAGCAATATAATTCTGTGGCATTTGCTTATGGGCGAA
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17809.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis