Browse Element(s) Details


OsAffx.29346.1.S1_at

Description tigr:9636.m02500
TID=OsAffx.29346.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2548011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g25430Os.17809.1.S1_at11/118+15343713..15350226Protein kinase domain containing protein, expressed
LOC_Os08g25430Os.57449.1.S1_x_at1/118+15343713..15350226Protein kinase domain containing protein, expressed
LOC_Os08g25440OsAffx.17148.1.S1_at11/118+15351518..15353290hypothetical protein
LOC_Os08g25450OsAffx.5924.1.S1_at11/118+15358139..15358699hypothetical protein
LOC_Os08g25450OsAffx.5924.1.S1_x_at11/118+15358139..15358699hypothetical protein
LOC_Os08g25460Os.11904.1.S1_at11/118+15361445..15368999transcription initiation factor IIE, alpha subunit, putative, expressed
LOC_Os08g25470OsAffx.17149.1.S1_at11/118+15369335..15370678hypothetical protein
LOC_Os08g25480OsAffx.29346.1.S1_at11/118+15373015..15373850hypothetical protein
LOC_Os08g25490OsAffx.17150.1.S1_at11/118+15377583..15379272Reticuline oxidase precursor, putative
LOC_Os08g25500NANA8+15384078..15384590transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g25510NANA8+15389138..15391059retrotransposon protein, putative, unclassified
LOC_Os08g25520NANA8+15393091..15395846retrotransposon protein, putative, unclassified
LOC_Os08g25530NANA8+15396511..15397944retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29346.1.S1_at--531--3351Chr08:15373049..15373073 (25 bp)
CACGAGCGCTCGTGTTGCTAGTGGA
LOC_Os08g25480
OsAffx.29346.1.S1_at--30--131Chr08:15373099..15373123 (25 bp)
ATTCACCTCGACAGTCTTGCTGTTG
LOC_Os08g25480
OsAffx.29346.1.S1_at--626--9091Chr08:15373125..15373149 (25 bp)
TGCTCATCTGCTCTGTCGCCAAGAG
LOC_Os08g25480
OsAffx.29346.1.S1_at--89--9431Chr08:15373153..15373177 (25 bp)
TCGGCCCTAATAAGCTACCTTCGAG
LOC_Os08g25480
OsAffx.29346.1.S1_at--213--8411Chr08:15373201..15373587 (25 bp)
GGCGCCAACGAGGACACGTCAAAAG
LOC_Os08g25480
OsAffx.29346.1.S1_at--630--6791Chr08:15373621..15373645 (25 bp)
GTTATTTGCTGATGGTTACCGCGGA
LOC_Os08g25480
OsAffx.29346.1.S1_at--72--5711Chr08:15373647..15373671 (25 bp)
GACTACTGGGCGGAGCATGCAATTC
LOC_Os08g25480
OsAffx.29346.1.S1_at--758--5931Chr08:15373659..15373683 (25 bp)
GAGCATGCAATTCATAGGCCAGAGT
LOC_Os08g25480
OsAffx.29346.1.S1_at--178--10111Chr08:15373673..15373697 (25 bp)
TAGGCCAGAGTTAGCAGCGTCGGCT
LOC_Os08g25480
OsAffx.29346.1.S1_at--799--1631Chr08:15373688..15373712 (25 bp)
AGCGTCGGCTGATGCACCCATGTTT
LOC_Os08g25480
OsAffx.29346.1.S1_at--945--1791Chr08:15373703..15373727 (25 bp)
ACCCATGTTTCGAGTTGGTGCGTCG
LOC_Os08g25480
Target Sequence 
CACGAGCGCTCGTGTTGCTAGTGGAGGCGCACCTGGGCGGCCGCGCTGCTATTCACCTCGACAGTCTTGCTGTTGCTGCT
CATCTGCTCTGTCGCCAAGAGCCGTCGGCCCTAATAAGCTACCTTCGAGCAGAGAAGATGGAAACAAAGAACGGCGCCAA
CGAGGACACGTCAAAAGTCAATCTTTGGGGGAATGCACTATCAAAATGTGGTTATTTGCTGATGGTTACCGCGGAGGACT
ACTGGGCGGAGCATGCAATTCATAGGCCAGAGTTAGCAGCGTCGGCTGATGCACCCATGTTTCGAGTTGGTGCGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29346.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis