Browse Element(s) Details


OsAffx.5923.1.S1_at

Description tigr:9636.m02489
TID=OsAffx.5923.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AY128280 AT3g13380MRP15_1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2538011/11Serine/threonine-protein kinase BRI1-like 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g25330OsAffx.22947.1.S1_x_at11/118+15274968..15279542retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g25330OsAffx.22947.2.S1_x_at4/118+15274968..15279542retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g25330OsAffx.22947.3.S1_x_at4/118+15274968..15279542retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g25330OsAffx.22947.5.S1_x_at1/118+15274968..15279542retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g25340OsAffx.17145.1.S1_at10/118+15282192..15285240hypothetical protein
LOC_Os08g25350NANA8+15286027..15289348Transposable element protein, putative, MuDR
LOC_Os08g25360OsAffx.5922.1.S1_at11/118+15291319..15291645hypothetical protein
LOC_Os08g25370NANA8+15294777..15295628hypothetical protein
LOC_Os08g25380OsAffx.5923.1.S1_at11/118+15298796..15302440Serine/threonine-protein kinase BRI1-like 1 precursor, putative, expressed
LOC_Os08g25390Os.18966.1.S1_a_at11/118+15306511..15317764Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplast precursor, putative, expressed
LOC_Os08g25390Os.18966.2.S1_at11/118+15306511..15317764Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplast precursor, putative, expressed
LOC_Os08g25410OsAffx.29345.1.S1_at11/118+15323722..15328493hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009556biological_processmicrosporogenesis
GO:0009729biological_processdetection of brassinosteroid stimulus
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0009826biological_processunidimensional cell growth
GO:0010234biological_processtapetal cell fate specification
GO:0005768cellular_componentendosome
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
GO:0042803molecular_functionprotein homodimerization activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5923.1.S1_at--958--7411Chr08:15299325..15299349 (25 bp)
GTGTTCCACATATCATACACCGGGA
LOC_Os08g25380
OsAffx.5923.1.S1_at--973--2031Chr08:15299268..15299292 (25 bp)
ACTTTGATGCCTATGTGTCAGACTT
LOC_Os08g25380
OsAffx.5923.1.S1_at--193--671Chr08:15299227..15299251 (25 bp)
ATGAATGCGCTCGATTCACATCTCA
LOC_Os08g25380
OsAffx.5923.1.S1_at--1036--6071Chr08:15299161..15299185 (25 bp)
GAGTACTGCCAGGATTTCCGGTGCA
LOC_Os08g25380
OsAffx.5923.1.S1_at--603--10291Chr08:15299147..15299171 (25 bp)
TTTCCGGTGCACAACCAAGGGCGAT
LOC_Os08g25380
OsAffx.5923.1.S1_at--75--5371Chr08:15299081..15299105 (25 bp)
GAAGAAACCGATTGACCCAACTGAA
LOC_Os08g25380
OsAffx.5923.1.S1_at--486--6371Chr08:15298990..15299014 (25 bp)
GATCCTACATTGATGGCCACGACAT
LOC_Os08g25380
OsAffx.5923.1.S1_at--998--871Chr08:15298897..15298921 (25 bp)
AGGCCTACCATGATCCAGGTCATGA
LOC_Os08g25380
OsAffx.5923.1.S1_at--646--5211Chr08:15298861..15298885 (25 bp)
GAATTTCAGGTTGACTCGGGCAGCA
LOC_Os08g25380
OsAffx.5923.1.S1_at--967--7591Chr08:15298844..15298868 (25 bp)
GGGCAGCAATTTCCTCGATGACTTC
LOC_Os08g25380
OsAffx.5923.1.S1_at--973--4031Chr08:15298829..15298853 (25 bp)
CGATGACTTCTCACTCAATTCAACA
LOC_Os08g25380
Target Sequence 
GTGTTCCACATATCATACACCGGGACATGAAGTCCAGCAATGTGTTGCTTGATGGAAACTTTGATGCCTATGTGTCAGAC
TTTGGGATGGCGAGACTCATGAATGCGCTCGATTCACATCTCACTGTGAGCATGCTTTCAGGAACACCTGGATATGTGCC
ACCTGAGTACTGCCAGGATTTCCGGTGCACAACCAAGGGCGATGTGTACAGCTATGGAGTTGTGCTCTTGGAGCTCCTCA
CAGGGAAGAAACCGATTGACCCAACTGAATTTGGTGACAGTAATCTTGTTGGCTGGGTGAAGCAGATGGTGGAGGACAGA
TGCAGTGAAATATATGATCCTACATTGATGGCCACGACATCTAGTGAATTGGAGCTCTATCAGTATCTGAAGATTGCTTG
CCGCTGCTTGGATGACCAGCCTAACCGCAGGCCTACCATGATCCAGGTCATGACAATGTTCAAAGAATTTCAGGTTGACT
CGGGCAGCAATTTCCTCGATGACTTCTCACTCAATTCAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5923.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis