Browse Element(s) Details


OsAffx.17145.1.S1_at

Description tigr:9636.m02485
TID=OsAffx.17145.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2534010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g25310Os.27595.1.S2_at11/118+15258729..15265628phosphatidylinositol transfer-like protein III, putative, expressed
LOC_Os08g25310Os.27595.1.S1_at11/118+15258729..15265628phosphatidylinositol transfer-like protein III, putative, expressed
LOC_Os08g25330OsAffx.22947.1.S1_x_at11/118+15274968..15279542retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g25330OsAffx.22947.2.S1_x_at4/118+15274968..15279542retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g25330OsAffx.22947.3.S1_x_at4/118+15274968..15279542retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g25330OsAffx.22947.5.S1_x_at1/118+15274968..15279542retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g25340OsAffx.17145.1.S1_at10/118+15282192..15285240hypothetical protein
LOC_Os08g25350NANA8+15286027..15289348Transposable element protein, putative, MuDR
LOC_Os08g25360OsAffx.5922.1.S1_at11/118+15291319..15291645hypothetical protein
LOC_Os08g25370NANA8+15294777..15295628hypothetical protein
LOC_Os08g25380OsAffx.5923.1.S1_at11/118+15298796..15302440Serine/threonine-protein kinase BRI1-like 1 precursor, putative, expressed
LOC_Os08g25390Os.18966.1.S1_a_at11/118+15306511..15317764Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplast precursor, putative, expressed
LOC_Os08g25390Os.18966.2.S1_at11/118+15306511..15317764Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17145.1.S1_at--890--8151NONE
GGAAAGACGAAGTACCGCCTGCCAT
NONE
OsAffx.17145.1.S1_at--515--4212Chr08:15284286..15284310 (25 bp)
CCGCCTGCCATATGTATCTTGTGAG
LOC_Os08g25340
OsAffx.17145.1.S1_at--602--5293Chr10:7229458..7229482 (25 bp)
GAAGGACGTTGCAACCTGGCAGCGA
NONE
OsAffx.17145.1.S1_at--15--9037Chr12:5809049..5809069 (21 bp)
TGCAACCTGGCAGCGATCTCTACAA
NONE
OsAffx.17145.1.S1_at--516--4631Chr08:15284331..15284355 (25 bp)
GCGATCTCTACAACTGCATTTGGGA
LOC_Os08g25340
OsAffx.17145.1.S1_at--1131--191Chr08:15284348..15284371 (24 bp)
ATTTGGGATGATCAGACCATTCAGA
LOC_Os08g25340
OsAffx.17145.1.S1_at--296--8931Chr08:15284540..15284564 (25 bp)
TGACCGTTGGCATATGTAGGTATAT
LOC_Os08g25340
OsAffx.17145.1.S1_at--617--6053Chr12:18503502..18503526 (25 bp)
GAGTTCGTTGTCGAACGGACCTTAT
NONE
OsAffx.17145.1.S1_at--303--2011Chr08:15284708..15284732 (25 bp)
ACTCTGGACGCTCCCGTCAAGTGGG
LOC_Os08g25340
OsAffx.17145.1.S1_at--802--3492Chr08:15285106..15285130 (25 bp)
CATGGTGGAAATAGACCTGCGAGTA
LOC_Os08g25340
OsAffx.17145.1.S1_at--686--3753Chr08:15285165..15285189 (25 bp)
CTCAGGCTTGGCTCGGGCTCACATA
LOC_Os08g25340
Target Sequence 
GGAAAGACGAAGTACCGCCTGCCATATGTATCTTGTGAGAAGGACGTTGCAACCTGGCAGCGATCTCTACAACTGCATTT
GGGATGATCAGACCATTCAGAAATTAATGACCGTTGGCATATGTAGGTATATGACAGAAGTAATGAGAGACACACGAAGC
ATCTCTGTCCTAGAGTTCGTTGTCGAACGGACCTTATCACCTGGCAACGGTCTCCACACCTACACTCTGGACGCTCCCGT
CAAGTGGGGAGTCCCAGTGGATTTACTTGCCATTATTGGACGGTCGCACCATGGTGGAAATAGACCTGCGAGTAGGGGTG
GACAAAAAGCTTGGGCTCGTGAGCTCGGCTCAGGCTTGGCTCGGGCTCACATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17145.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis