Browse Element(s) Details


Os.19028.1.S1_at

Description gb:BM419650
DB_XREF= gi:18386452
DB_XREF=R016H02
CLONE=R016H02
TID=Os.19028.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.19028 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1341010/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g13390OsAffx.18824.1.S1_at11/1111+7327298..7328002hypothetical protein
LOC_Os11g13400NANA11+7331082..7331312hypothetical protein
LOC_Os11g13410OsAffx.18825.1.S1_at11/1111+7337563..7341443NB-ARC domain containing protein, expressed
LOC_Os11g13410OsAffx.18825.1.S1_x_at11/1111+7337563..7341443NB-ARC domain containing protein, expressed
LOC_Os11g13410Os.19028.1.S1_at10/1111+7337563..7341443NB-ARC domain containing protein, expressed
LOC_Os11g13420Os.27357.1.A1_at11/1111+7341826..7343758RNase3 domain containing protein, expressed
LOC_Os11g13430OsAffx.18826.1.S1_at11/1111+7351627..7355065NB-ARC domain containing protein
LOC_Os11g13440OsAffx.18827.1.S1_at11/1111+7360559..7363322NB-ARC domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19028.1.S1_at--633--8671Chr11:7341189..7341213 (25 bp)
TGTGTATACATGCACCCAAGCCCGA
LOC_Os11g13410
Os.19028.1.S1_at--53--3251Chr11:7341205..7341229 (25 bp)
CAAGCCCGAACCTGCTGTCCAAATT
LOC_Os11g13410
Os.19028.1.S1_at--625--2631Chr11:7341213..7341237 (25 bp)
AACCTGCTGTCCAAATTCCTGTCAT
LOC_Os11g13410
Os.19028.1.S1_at--1001--8691Chr11:7341220..7341244 (25 bp)
TGTCCAAATTCCTGTCATCTTCAAA
LOC_Os11g13410
Os.19028.1.S1_at--999--3271NONE
CAAAATGTTATTTTCCTTCAGAACA
NONE
Os.19028.1.S1_at--559--3451Chr11:7341308..7341332 (25 bp)
CAGTAGATTATAGCCAGATTTCAGT
LOC_Os11g13410
Os.19028.1.S1_at--3--4431Chr11:7341320..7341344 (25 bp)
GCCAGATTTCAGTAGTAGATGTTTT
LOC_Os11g13410
Os.19028.1.S1_at--1042--6271Chr11:7341337..7341361 (25 bp)
GATGTTTTTCAGCTATATATGTTTT
LOC_Os11g13410
Os.19028.1.S1_at--345--1191Chr11:7341374..7341398 (25 bp)
AGTAGCTAAGGATCCTACCGTGTGT
LOC_Os11g13410
Os.19028.1.S1_at--286--6371Chr11:7341384..7341408 (25 bp)
GATCCTACCGTGTGTTTTTGTGCAT
LOC_Os11g13410
Os.19028.1.S1_at--810--3711Chr11:7341388..7341412 (25 bp)
CTACCGTGTGTTTTTGTGCATATAA
LOC_Os11g13410
Target Sequence 
TGTGTATACATGCACCCAAGCCCGAACCTGCTGTCCAAATTCCTGTCATCTTCAAAATGTTATTTTCCTTCAGAACANTT
CCTATNCAANCTTCGCAAAGTTAACGAGNCAATATTTAACAGTAGATTATAGCCAGATTTCAGTAGTAGATGTTTTTCAG
CTATATATGTTTTTTTAGTNCAAACAGTAGCTAAGGATCCTACCGTGTGTTTTTGTGCATATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19028.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis