Browse Element(s) Details


Os.27357.1.A1_at

Description gb:CB665960
DB_XREF= gi:29669685
DB_XREF=OSJNEd12K10.r
CLONE=OSJNEd12K10
TID=Os.27357.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.27357 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_566463.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1342011/11RNase3 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g13390OsAffx.18824.1.S1_at11/1111+7327298..7328002hypothetical protein
LOC_Os11g13400NANA11+7331082..7331312hypothetical protein
LOC_Os11g13410OsAffx.18825.1.S1_at11/1111+7337563..7341443NB-ARC domain containing protein, expressed
LOC_Os11g13410OsAffx.18825.1.S1_x_at11/1111+7337563..7341443NB-ARC domain containing protein, expressed
LOC_Os11g13410Os.19028.1.S1_at10/1111+7337563..7341443NB-ARC domain containing protein, expressed
LOC_Os11g13420Os.27357.1.A1_at11/1111+7341826..7343758RNase3 domain containing protein, expressed
LOC_Os11g13430OsAffx.18826.1.S1_at11/1111+7351627..7355065NB-ARC domain containing protein
LOC_Os11g13440OsAffx.18827.1.S1_at11/1111+7360559..7363322NB-ARC domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27357.1.A1_at--142--3131Chr11:7342375..7342399 (25 bp)
AATTTCAAGCGTCTGGAGCAACTGA
LOC_Os11g13420
Os.27357.1.A1_at--1136--10071Chr11:7342341..7342365 (25 bp)
TAGGGTTTACAAGTGGCGCTTCTTC
LOC_Os11g13420
Os.27357.1.A1_at--247--8471Chr11:7342328..7342352 (25 bp)
TGGCGCTTCTTCACAACATATTGCA
LOC_Os11g13420
Os.27357.1.A1_at--504--1551Chr11:7342227..7342323 (25 bp)
AGCTTCGCTCGAGTTTCCAGACAAA
LOC_Os11g13420
Os.27357.1.A1_at--252--5471Chr11:7342202..7342226 (25 bp)
GAACTCGTCTAGATCTGTACAGTCT
LOC_Os11g13420
Os.27357.1.A1_at--247--10131Chr11:7342012..7342036 (25 bp)
TATGCATTACTGGAGGCGGCCGCAA
LOC_Os11g13420
Os.27357.1.A1_at--241--5171Chr11:7341991..7342015 (25 bp)
GCAAGATAATGGCTCAACGTCAGTG
LOC_Os11g13420
Os.27357.1.A1_at--1055--1891Chr11:7341975..7341999 (25 bp)
ACGTCAGTGAGCATTACTGTTTGGC
LOC_Os11g13420
Os.27357.1.A1_at--168--1971Chr11:7341960..7341984 (25 bp)
ACTGTTTGGCTGTTTTGCTGTTTTG
LOC_Os11g13420
Os.27357.1.A1_at--383--6451Chr11:7341936..7341960 (25 bp)
GATCAGCCCATTTTGAGGTGCTAAA
LOC_Os11g13420
Os.27357.1.A1_at--646--3231Chr11:7341865..7341889 (25 bp)
CAAGACCTTGTGTATTTGTTCAATT
LOC_Os11g13420
Target Sequence 
AATTTCAAGCGTCTGGAGCAACTGATGTTTCAATTAGGGTTTACAAGTGGCGCTTCTTCACAACATATTGCAGATGAGCT
TCGCTCGAGTTTCCAGACAAAGAACTCGTCTAGATCTGTACAGTCTAAGCAAGAAGCAGCAAAATGAATAGTTTAGAATG
TAGTGACTGATACAAGCACATGTGAATTCTGGAACATGAGATCCAACGGNCACACNCACAGTGAGTGATTCGCGATTANT
GTTTGGCTGTTTGTCAAAAAAAAGCTAGAGTGAATTGAACAATATATGANGTATGCATTACTGGAGGCGGCCGCAAGATA
ATGGCTCAACGTCAGTGAGCATTACTGTTTGGCTGTTTTGCTGTTTTGATCAGCCCATTTTGAGGTGCTAAAAANATGTG
TTTCTNCTCATTGAGGGTGATGTAGGCCATNGGTGTTATCAAGACCTTGTGTATTTGTTCAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27357.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis