Browse Element(s) Details


OsAffx.18825.1.S1_at

Description tigr:9639.m01232
TID=OsAffx.18825.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1341011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g13390OsAffx.18824.1.S1_at11/1111+7327298..7328002hypothetical protein
LOC_Os11g13400NANA11+7331082..7331312hypothetical protein
LOC_Os11g13410OsAffx.18825.1.S1_at11/1111+7337563..7341443NB-ARC domain containing protein, expressed
LOC_Os11g13410OsAffx.18825.1.S1_x_at11/1111+7337563..7341443NB-ARC domain containing protein, expressed
LOC_Os11g13410Os.19028.1.S1_at10/1111+7337563..7341443NB-ARC domain containing protein, expressed
LOC_Os11g13420Os.27357.1.A1_at11/1111+7341826..7343758RNase3 domain containing protein, expressed
LOC_Os11g13430OsAffx.18826.1.S1_at11/1111+7351627..7355065NB-ARC domain containing protein
LOC_Os11g13440OsAffx.18827.1.S1_at11/1111+7360559..7363322NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18825.1.S1_at--166--1371Chr11:7340278..7340302 (25 bp)
AGAGCTTACCAACTTGCAGTGCAAT
LOC_Os11g13410
OsAffx.18825.1.S1_at--94--2071Chr11:7340289..7340313 (25 bp)
ACTTGCAGTGCAATGTTGAGCTAAT
LOC_Os11g13410
OsAffx.18825.1.S1_at--928--1111Chr11:7340295..7340319 (25 bp)
AGTGCAATGTTGAGCTAATGGAAAA
LOC_Os11g13410
OsAffx.18825.1.S1_at--913--8131Chr11:7340314..7340338 (25 bp)
GGAAAAGGAAGATCTGGATATGCTC
LOC_Os11g13410
OsAffx.18825.1.S1_at--906--10131Chr11:7340332..7340356 (25 bp)
TATGCTCGGTGAATTGCCTGCTCTT
LOC_Os11g13410
OsAffx.18825.1.S1_at--661--9431Chr11:7340337..7340361 (25 bp)
TCGGTGAATTGCCTGCTCTTCTTGT
LOC_Os11g13410
OsAffx.18825.1.S1_at--209--3171Chr11:7340343..7340367 (25 bp)
AATTGCCTGCTCTTCTTGTCCTTGA
LOC_Os11g13410
OsAffx.18825.1.S1_at--858--9091Chr11:7340350..7340374 (25 bp)
TGCTCTTCTTGTCCTTGAGCTAATT
LOC_Os11g13410
OsAffx.18825.1.S1_at--571--3651Chr11:7340354..7340378 (25 bp)
CTTCTTGTCCTTGAGCTAATTGTAG
LOC_Os11g13410
OsAffx.18825.1.S1_at--533--3611Chr11:7340357..7340381 (25 bp)
CTTGTCCTTGAGCTAATTGTAGAAA
LOC_Os11g13410
OsAffx.18825.1.S1_at--714--3491Chr11:7340366..7340390 (25 bp)
GAGCTAATTGTAGAAAAAACTCCCA
LOC_Os11g13410
Target Sequence 
AGAGCTTACCAACTTGCAGTGCAATGTTGAGCTAATGGAAAAGGAAGATCTGGATATGCTCGGTGAATTGCCTGCTCTTC
TTGTCCTTGAGCTAATTGTAGAAAAAACTCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18825.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis