Browse Element(s) Details


OsAffx.18824.1.S1_at

Description tigr:9639.m01230
TID=OsAffx.18824.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1339011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g12874Os.27691.2.S1_x_at1/1111+7302931..7310235retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g13390OsAffx.18824.1.S1_at11/1111+7327298..7328002hypothetical protein
LOC_Os11g13400NANA11+7331082..7331312hypothetical protein
LOC_Os11g13410OsAffx.18825.1.S1_at11/1111+7337563..7341443NB-ARC domain containing protein, expressed
LOC_Os11g13410OsAffx.18825.1.S1_x_at11/1111+7337563..7341443NB-ARC domain containing protein, expressed
LOC_Os11g13410Os.19028.1.S1_at10/1111+7337563..7341443NB-ARC domain containing protein, expressed
LOC_Os11g13420Os.27357.1.A1_at11/1111+7341826..7343758RNase3 domain containing protein, expressed
LOC_Os11g13430OsAffx.18826.1.S1_at11/1111+7351627..7355065NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18824.1.S1_at--618--9091Chr11:7327923..7327947 (25 bp)
TGCTCACCGTGCAGCTTGTTGCAGT
LOC_Os11g13390
OsAffx.18824.1.S1_at--962--9651Chr11:7327920..7327944 (25 bp)
TCACCGTGCAGCTTGTTGCAGTGAT
LOC_Os11g13390
OsAffx.18824.1.S1_at--127--5071Chr11:7327913..7327937 (25 bp)
GCAGCTTGTTGCAGTGATGATGCAC
LOC_Os11g13390
OsAffx.18824.1.S1_at--788--7392Chr10:3976094..3976157 (24 bp)
GTGATGATGCACTGCGGCTGCGCCA
NONE
OsAffx.18824.1.S1_at--823--651Chr11:7327894..7327918 (25 bp)
ATGCACTGCGGCTGCGCCATTGCAG
LOC_Os11g13390
OsAffx.18824.1.S1_at--613--8331Chr11:7327885..7327909 (25 bp)
GGCTGCGCCATTGCAGCGCAAGCAG
LOC_Os11g13390
OsAffx.18824.1.S1_at--1152--1511Chr11:7327844..7327868 (25 bp)
AGCATGGAGTAGGATGCTCCGCGCA
LOC_Os11g13390
OsAffx.18824.1.S1_at--176--6351Chr11:7327355..7327856 (25 bp)
GATGCTCCGCGCAGGCTTCCTTTCA
LOC_Os11g13390
OsAffx.18824.1.S1_at--821--3671Chr11:7327336..7327360 (25 bp)
CTTTCATCCATGCATGTTCCTATTA
LOC_Os11g13390
OsAffx.18824.1.S1_at--592--571Chr11:7327331..7327355 (25 bp)
ATCCATGCATGTTCCTATTAAGTTC
LOC_Os11g13390
OsAffx.18824.1.S1_at--807--3511Chr11:7327328..7327352 (25 bp)
CATGCATGTTCCTATTAAGTTCCTT
LOC_Os11g13390
Target Sequence 
TGCTCACCGTGCAGCTTGTTGCAGTGATGATGCACTGCGGCTGCGCCATTGCAGCGCAAGCAGCAGGAGGAGGAGGAGGA
GCATGGAGTAGGATGCTCCGCGCAGGCTTCCTTTCATCCATGCATGTTCCTATTAAGTTCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18824.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis