Browse Element(s) Details


Os.19218.1.S1_x_at

Description gb:CA765726
DB_XREF= gi:27547499
DB_XREF=AF53-Rpf_08_K01_T7_013.ab1
CLONE=C0002929
TID=Os.19218.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.19218 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0011G08.15 (P0011G08.15), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0627011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06180NANA1+2941800..2944537transposon protein, putative, unclassified
LOC_Os01g06200NANA1+2946899..2949815retrotransposon protein, putative, unclassified
LOC_Os01g06210Os.1899.1.S1_at1/111+2951316..2952306PrMC3, putative
LOC_Os01g06220Os.33885.1.S1_at11/111+2953968..2955241PrMC3, putative, expressed
LOC_Os01g06230NANA1+2957996..2958271Auxin responsive protein
LOC_Os01g06240OsAffx.23133.1.S1_at11/111+2959224..2961719D-mannose binding lectin family protein, expressed
LOC_Os01g06250OsAffx.10935.1.S1_x_at11/111+2963126..2964148Dirigent-like protein
LOC_Os01g06250OsAffx.10935.1.S1_at11/111+2963126..2964148Dirigent-like protein
LOC_Os01g06260OsAffx.10558.2.S1_s_at11/111+2965956..2967533hypothetical protein
LOC_Os01g06260OsAffx.10558.2.S1_at11/111+2965956..2967533hypothetical protein
LOC_Os01g06260OsAffx.10558.1.S1_x_at9/111+2965956..2967533hypothetical protein
LOC_Os01g06260OsAffx.10558.1.S1_at5/111+2965956..2967533hypothetical protein
LOC_Os01g06270Os.19218.1.S1_x_at11/111+2967932..2976115expressed protein
LOC_Os01g06270Os.37997.1.S1_s_at11/111+2967932..2976115expressed protein
LOC_Os01g06270OsAffx.10936.1.S1_x_at10/111+2967932..2976115expressed protein
LOC_Os01g06280Os.33613.1.S1_at11/111+2979344..2982962Protein kinase domain containing protein, expressed
LOC_Os01g06290Os.18216.2.S1_x_at11/111+2983116..2986082RNA recognition motif family protein, expressed
LOC_Os01g06290Os.18216.1.S1_at10/111+2983116..2986082RNA recognition motif family protein, expressed
LOC_Os01g06300Os.14919.1.S1_at3/111+2988199..2994119transposon protein, putative, Mutator sub-class
LOC_Os01g06300OsAffx.29313.1.S1_at1/111+2988199..2994119transposon protein, putative, Mutator sub-class
LOC_Os01g06310Os.6389.1.S1_at11/111+2996395..2997985expressed protein
LOC_Os01g06320Os.31652.1.S1_at11/111+3000662..3002530myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g06320Os.31652.2.S1_x_at10/111+3000662..3002530myb-like DNA-binding domain, SHAQKYF class family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19218.1.S1_x_at--684--9371Chr01:2968445..2968469 (25 bp)
TCGAGTCTGTAGAACGACCGACGTT
LOC_Os01g06270
Os.19218.1.S1_x_at--629--5291Chr01:2968413..2968437 (25 bp)
GAAGTCCGCCGAGCAAAGGTTCCAA
LOC_Os01g06270
Os.19218.1.S1_x_at--748--6011Chr01:2968383..2968407 (25 bp)
GAGAGAGCTGAGTCAAGCCCTTCAC
LOC_Os01g06270
Os.19218.1.S1_x_at--575--7851Chr01:2968351..2968375 (25 bp)
GGTACCTTCTACACCTAAAGCTGAA
LOC_Os01g06270
Os.19218.1.S1_x_at--544--2351Chr01:2968335..2968359 (25 bp)
AAAGCTGAAACTGTGGTCTCCCCAA
LOC_Os01g06270
Os.19218.1.S1_x_at--943--2431Chr01:2968312..2968336 (25 bp)
AAAATCTCCAGCGAAACCTGACCAG
LOC_Os01g06270
Os.19218.1.S1_x_at--149--3391Chr01:2968290..2968314 (25 bp)
CAGCCGCTGGATCTTGATTCTGAAC
LOC_Os01g06270
Os.19218.1.S1_x_at--351--1611Chr01:2968171..2968195 (25 bp)
AGCTGACATCTCCAAATCGCAATAA
LOC_Os01g06270
Os.19218.1.S1_x_at--348--9771Chr01:2968142..2968166 (25 bp)
TAATGACTGCATGTTACCCACTTCG
LOC_Os01g06270
Os.19218.1.S1_x_at--623--8311Chr01:2968108..2968132 (25 bp)
GGCTCTACCCGCAGTTGTATAGTTG
LOC_Os01g06270
Os.19218.1.S1_x_at--175--6771Chr01:2968046..2968070 (25 bp)
GTTACTGTATGAATGCACCCAAGTT
LOC_Os01g06270
Target Sequence 
TCGAGTCTGTAGAACGACCGACGTTAGACATTGAAGTCCGCCGAGCAAAGGTTCCAACAAAGGAGAGAGCTGAGTCAAGC
CCTTCACCAGTTCAGGTACCTTCTACACCTAAAGCTGAAACTGTGGTCTCCCCAAAATCTCCAGCGAAACCTGACCAGCC
GCTGGATCTTGATTCTGAACTTGCAAAGTTAGAATTAGAATTTGGTCAAGTTAACAAATACTCACCTGAAGAGATAAGTG
GGTGGGAGTTTGACGAACTTGAAGAGGAGCTGAGAGCTGACATCTCCAAATCGCAATAAAAAATAATGACTGCATGTTAC
CCACTTCGCCGTGTTCTGGCTCTACCCGCAGTTGTATAGTTGAATGTATAGAACTTTCTATTGTGTTCATTGATGTTGTG
TTACTGTATGAATGCACCCAAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19218.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis