Browse Element(s) Details


Os.19268.1.S1_at

Description gb:AK101831.1
DB_XREF= gi:32987040
TID=Os.19268.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.19268 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-206-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033068K21, full insert sequence.
FL= gb:AK109361.2 gb:AK101831.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0651011/114Fe-4S binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06470Os.44893.2.S1_x_at9/115+3301300..3312031expressed protein
LOC_Os05g06470Os.44893.2.S1_at6/115+3301300..3312031expressed protein
LOC_Os05g06480Os.49722.2.S1_at10/115+3313397..3317834Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os05g06480Os.49722.2.S1_x_at10/115+3313397..3317834Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os05g06490Os.9469.1.S1_at11/115+3320083..3322613RNA polymerase Rpb7, N-terminal domain containing protein, expressed
LOC_Os05g06500Os.10691.1.S1_at10/115+3323165..3325263universal stress protein family protein, expressed
LOC_Os05g06510Os.37384.1.S1_s_at11/115+3326831..33308634Fe-4S binding domain containing protein, expressed
LOC_Os05g06510Os.19268.1.S1_at11/115+3326831..33308634Fe-4S binding domain containing protein, expressed
LOC_Os05g06510Os.37384.1.S1_x_at10/115+3326831..33308634Fe-4S binding domain containing protein, expressed
LOC_Os05g06520NANA5+3333562..3333816Helix-loop-helix DNA-binding domain containing protein
LOC_Os05g06530Os.24178.1.A1_at10/115+3339204..3342505expressed protein
LOC_Os05g06530Os.24178.1.A1_x_at9/115+3339204..3342505expressed protein
LOC_Os05g06530Os.11641.1.S1_at7/115+3339204..3342505expressed protein
LOC_Os05g06540Os.24080.1.A1_at1/115+3347106..3351035hypothetical protein
LOC_Os05g06540Os.38041.1.S1_at1/115+3347106..3351035hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19268.1.S1_at--873--2811Chr05:3327383..3327406 (24 bp)
AAGATTGTTGGAAGAGTTCTACGCA
LOC_Os05g06510
Os.19268.1.S1_at--280--6531Chr05:3327381..3327405 (25 bp)
GATTGTTGGAAGAGTTCTACGCAAA
LOC_Os05g06510
Os.19268.1.S1_at--990--2551Chr05:3327372..3327396 (25 bp)
AAGAGTTCTACGCAAAATACCGGCA
LOC_Os05g06510
Os.19268.1.S1_at--349--6071Chr05:3327370..3327394 (25 bp)
GAGTTCTACGCAAAATACCGGCACA
LOC_Os05g06510
Os.19268.1.S1_at--837--10571Chr05:3327367..3327391 (25 bp)
TTCTACGCAAAATACCGGCACAATT
LOC_Os05g06510
Os.19268.1.S1_at--421--5111Chr05:3327361..3327385 (25 bp)
GCAAAATACCGGCACAATTTGGCCA
LOC_Os05g06510
Os.19268.1.S1_at--38--2271Chr05:3327358..3327382 (25 bp)
AAATACCGGCACAATTTGGCCATGC
LOC_Os05g06510
Os.19268.1.S1_at--570--311Chr05:3327356..3327380 (25 bp)
ATACCGGCACAATTTGGCCATGCAC
LOC_Os05g06510
Os.19268.1.S1_at--1001--1771Chr05:3327354..3327378 (25 bp)
ACCGGCACAATTTGGCCATGCACGC
LOC_Os05g06510
Os.19268.1.S1_at--768--3591Chr05:3327011..3327035 (25 bp)
CTTGGTAAGTAGGAGATATTCCATC
LOC_Os05g06510
Os.19268.1.S1_at--849--7091Chr05:3326975..3326999 (25 bp)
GTCACAACATGCTTTCCATAAAGTC
LOC_Os05g06510
Target Sequence 
AAGATTGTTGGAAGAGTTCTACGCAAAATACCGGCACAATTTGGCCATGCACGCATTGNAGGACCACCCAGATTATCTCC
TGGAAGCATTACAAGAAGCTCTATCACTAGTCGGGCCTGTGAAAGGTTACCCAACCTTGCCAAGTCTCTGAAANTAGTAA
ATGGCATCTCCAAGTNTCTCATCCAGATATAGGATAACTTTGATCCAGTTAGTTAGTATGGAAGTTGCATTGTGAAGGTA
AGCCAAGGTGAGAAGGTATTCTGCCAACTGATTGCCCAATGAACAGTTTGGGAGTTGGGACCAACCATTTCTGGCTAAGT
GGCAAAAATCAGTAATCCAACAGTCAGCAGATCAATCACTAACTTACTCTTAAGCTTGGTAAGTAGGAGATATTCCATCT
GAGATTGGATGTCACAACATGCTTTCCATAAAGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19268.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis