Browse Element(s) Details


Os.19270.1.S1_at

Description gb:AK103607.1
DB_XREF= gi:32988816
TID=Os.19270.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19270 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033133H15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033133H15, full insert sequence.
FL= gb:AK103607.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6353010/11Histone-like transcription factor and archaeal histone family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63490Os.4531.1.S1_at11/113+35804135..35806721Pantoate-beta-alanine ligase, putative, expressed
LOC_Os03g63500Os.21096.1.S1_at10/113+35807631..35814424AFG1-like ATPase family protein, putative, expressed
LOC_Os03g63510Os.24799.1.S1_at11/113+35816478..35821838pentatricopeptide, putative, expressed
LOC_Os03g63520Os.35309.1.A1_at11/113+35822454..35827086Der1-like family protein, expressed
LOC_Os03g63530Os.19270.1.S1_at10/113+35829135..35833105Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os03g63540Os.5927.1.S1_at10/113+35834707..35835736expressed protein
LOC_Os03g63550Os.49114.1.S1_at11/113+35836236..35838324expressed protein
LOC_Os03g63560Os.24660.1.S1_at11/113+35839760..35841999pentatricopeptide, putative, expressed
LOC_Os03g63570OsAffx.3684.1.S1_at10/113+35843343..35844556hypothetical protein
LOC_Os03g63580OsAffx.25809.1.S1_x_at11/113+35845714..35847333phosphoesterase family protein, putative, expressed
LOC_Os03g63580OsAffx.25809.1.S1_at11/113+35845714..35847333phosphoesterase family protein, putative, expressed
LOC_Os03g63590Os.9048.1.S1_at11/113+35847566..35850627Cleavage and polyadenylation specificity factor, 73 kDa subunit, putative, expressed
LOC_Os03g63600OsAffx.13593.1.S1_at11/113+35855340..35856869Tetraspanin family protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19270.1.S1_at--482--6471NONE
GATAACCTTTCAACAGCAGTGTGCA
NONE
Os.19270.1.S1_at--279--3091Chr03:35832542..35832566 (25 bp)
AATAAGTTGCTAGTGCTCCGCGAGG
LOC_Os03g63530
Os.19270.1.S1_at--428--6151Chr03:35832675..35832699 (25 bp)
GAGGTCATCCTTTCACGAGTTATCT
LOC_Os03g63530
Os.19270.1.S1_at--540--10151Chr03:35832695..35832719 (25 bp)
TATCTCCTGGGAGGGTTCTGCAATT
LOC_Os03g63530
Os.19270.1.S1_at--997--10591Chr03:35832710..35832734 (25 bp)
TTCTGCAATTGTAAACGCCAGCTGT
LOC_Os03g63530
Os.19270.1.S1_at--1139--7311Chr03:35832733..35832757 (25 bp)
GTGCAGCTCATGTTGCCCTCAGGAC
LOC_Os03g63530
Os.19270.1.S1_at--1157--5731Chr03:35832755..35832779 (25 bp)
GACTGGCATCTTGCGACATGTTCAA
LOC_Os03g63530
Os.19270.1.S1_at--1012--631Chr03:35832892..35832916 (25 bp)
ATGCTTGCTTAGAGCCTCAAATCAG
LOC_Os03g63530
Os.19270.1.S1_at--30--3491Chr03:35832914..35832938 (25 bp)
CAGGATCACCTTTTTGGCTGTGTAA
LOC_Os03g63530
Os.19270.1.S1_at--158--5691Chr03:35833036..35833060 (25 bp)
GACTTGTTCATGTACTAGTTCATTA
LOC_Os03g63530
Os.19270.1.S1_at--218--1231Chr03:35833052..35833076 (25 bp)
AGTTCATTACATATATTTTCGCAGG
LOC_Os03g63530
Target Sequence 
GATAACCTTTCAACAGCAGTGTGCAACCAGAAAAGATACAAGTTTCTCTCAGATTTTGTTCCNCAGAAANGTTNACNAGC
TGAAGATGCTTTGAAGGCTCCANGTTANCAGCCAAGTGAACCAACCACAATAAGTTGCTAGTGCTCCGCGAGGGAGGTCA
TCCTTTCACGAGTTATCTCCTGGGAGGGTTCTGCAATTGTAAACGCCAGCTGTGCAGCTCATGTTGCCCTCAGGACTGGC
ATCTTGCGACATGTTCAATATGATTCTGATCAGAATCGGAGGCTTAAAAGAAGATTATAAGGGGAAACCTGAGTAATCTA
CATATGAAAGAAGCATGATGAAACTTTTTGTCATGAGAATCACTTGAAATATGCTTGCTTAGAGCCTCAAATCAGGATCA
CCTTTTTGGCTGTGTAAGCTGTGGGTTGTGTGAGGTGGATGTAGCTTAGGCTAAATGTTACTGTGTATTTTTTTTTAGAT
AATACGTTACTAGTAGTATACATTTGTGAGTTCTGACTTGTTCATGTACTAGTTCATTACATATATTTTCGCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19270.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis