Browse Element(s) Details


Os.19367.1.S1_at

Description gb:AK065127.1
DB_XREF= gi:32975145
TID=Os.19367.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.19367 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001P07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001P07, full insert sequence.
FL= gb:AK065127.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5098011/11Sumoylation ligase E3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50940Os.24044.1.S1_at9/113+29051234..29054086Cytochrome c oxidase assembly protein ctaG, putative, expressed
LOC_Os03g50960OsAffx.3569.1.S1_at11/113+29060906..29061504Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g50960OsAffx.3569.1.S1_x_at11/113+29060906..29061504Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g50970Os.12990.1.S1_x_at11/113+29065222..29070465retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g50980Os.19367.1.S1_at11/113+29077376..29085535Sumoylation ligase E3, putative, expressed
LOC_Os03g50990OsAffx.25674.1.S1_at11/113+29085918..29086310expressed protein
LOC_Os03g51000Os.46088.1.S1_s_at11/113+29088237..290961233,4-dihydroxy-2-butanone kinase, putative, expressed
LOC_Os03g51010Os.8043.1.S1_at11/113+29100698..29104260hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g51020Os.17861.1.S2_at11/113+29108530..29115730protein kinase, putative, expressed
LOC_Os03g51020Os.17861.1.S1_at11/113+29108530..29115730protein kinase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0019789molecular_functionSUMO ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19367.1.S1_at--48--3431Chr03:29084967..29084991 (25 bp)
CAGACTCTGATTAGCAGCTGATGCT
LOC_Os03g50980
Os.19367.1.S1_at--744--6331Chr03:29084986..29085010 (25 bp)
GATGCTATTTGATGTATGGTCCCTG
LOC_Os03g50980
Os.19367.1.S1_at--462--751Chr03:29084997..29085021 (25 bp)
ATGTATGGTCCCTGCTATAGTGCTA
LOC_Os03g50980
Os.19367.1.S1_at--841--1731Chr03:29085046..29085070 (25 bp)
ACCATCACTTATTTTTTGGCTGTGC
LOC_Os03g50980
Os.19367.1.S1_at--524--10871Chr03:29085061..29085085 (25 bp)
TTGGCTGTGCACTAAGAAGGGCATC
LOC_Os03g50980
Os.19367.1.S1_at--377--9551Chr03:29085089..29085113 (25 bp)
TCTTTTTTGGTTGTGCCCTAGTTGA
LOC_Os03g50980
Os.19367.1.S1_at--1017--2731Chr03:29085162..29085186 (25 bp)
AAGAAGCTGGGTCGGTTATCCTTGC
LOC_Os03g50980
Os.19367.1.S1_at--525--7871Chr03:29085175..29085199 (25 bp)
GGTTATCCTTGCTTCTACTAAGGTG
LOC_Os03g50980
Os.19367.1.S1_at--539--7851Chr03:29085224..29085248 (25 bp)
GGTAGGTCCATTGTGTAGGCAGCAA
LOC_Os03g50980
Os.19367.1.S1_at--859--631Chr03:29085322..29085346 (25 bp)
ATGCTTTTCTGTTGCCTGGTGTACA
LOC_Os03g50980
Os.19367.1.S1_at--1082--4191Chr03:29085400..29085424 (25 bp)
CCCCTGGTGATGTGTACTTGACGTT
LOC_Os03g50980
Target Sequence 
CAGACTCTGATTAGCAGCTGATGCTATTTGATGTATGGTCCCTGCTATAGTGCTATGCCCCCCAGATGCATGCACCATCA
CCATCACTTATTTTTTGGCTGTGCACTAAGAAGGGCATCACTTCTTTTTTGGTTGTGCCCTAGTTGAGAAGGGATAGATG
TTGGAGCTATGGTGGATGGATTGATGTTTGGCGGCAAGAAGCTGGGTCGGTTATCCTTGCTTCTACTAAGGTGGTATTGA
TTGATACAGNTAGGTAGGGTAGGTCCATTGTGTAGGCAGCAATTTTGTAGCTAGCTTGCATATACATCACAATGGAATTG
CAGTGACAGAAGTTAGCTGATGNAAATATCATATGATGCTTTTCTGTTGCCTGGTGTACATATTATATGATGTTTTTTTT
TTCTGTTGGTTGGTTACATATAGAGAGTTACTCCCCCTGGTGATGTGTACTTGACGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19367.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis