Browse Element(s) Details


Os.19385.1.S1_at

Description gb:AK107206.1
DB_XREF= gi:32992415
TID=Os.19385.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19385 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0042A10.26 (P0042A10.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-125-B09, full insert sequence.
FL= gb:AK107020.1 gb:AK107206.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5273011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52700NANA1+30631199..30632388hypothetical protein
LOC_Os01g52710Os.32160.1.S1_a_at11/111+30638225..30642621Glycosyl transferase family 8 protein, expressed
LOC_Os01g52710Os.32160.2.S1_x_at11/111+30638225..30642621Glycosyl transferase family 8 protein, expressed
LOC_Os01g52710Os.32160.1.S1_at11/111+30638225..30642621Glycosyl transferase family 8 protein, expressed
LOC_Os01g52720Os.24850.1.S1_at11/111+30647596..30650841auxin-induced, putative, expressed
LOC_Os01g52720OsAffx.2318.2.A1_x_at11/111+30647596..30650841auxin-induced, putative, expressed
LOC_Os01g52720Os.24850.1.S1_x_at11/111+30647596..30650841auxin-induced, putative, expressed
LOC_Os01g52720OsAffx.2318.2.A1_at8/111+30647596..30650841auxin-induced, putative, expressed
LOC_Os01g52730Os.19385.1.S2_at11/111+30649597..30651931expressed protein
LOC_Os01g52730Os.19385.1.S1_at11/111+30649597..30651931expressed protein
LOC_Os01g52730Os.19385.2.S1_at2/111+30649597..30651931expressed protein
LOC_Os01g52740NANA1+30667159..30668442expressed protein
LOC_Os01g52750Os.20579.1.S1_at11/111+30670927..30675782Subtilisin N-terminal Region family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19385.1.S1_at--1078--3591Chr01:30651426..30651450 (25 bp)
CATTGAAGGATGACCCGGCACGGCT
LOC_Os01g52730
Os.19385.1.S1_at--961--7191Chr01:30651396..30651420 (25 bp)
GTCGTTTGTGCACACATGCATGCAG
LOC_Os01g52730
Os.19385.1.S1_at--639--6111Chr01:30651369..30651393 (25 bp)
GAGTGGACGACGACTGGTCGCCAAA
LOC_Os01g52730
Os.19385.1.S1_at--789--9411Chr01:30651334..30651358 (25 bp)
TCGTCCTCTCGGCTTGCACTGGGTG
LOC_Os01g52730
Os.19385.1.S1_at--150--9011Chr01:30651320..30651344 (25 bp)
TGCACTGGGTGCTCCCATTTTTGTT
LOC_Os01g52730
Os.19385.1.S1_at--902--8771Chr01:30651299..30651323 (25 bp)
TGTTCGTTCCCCTTAATTAGTTGCG
LOC_Os01g52730
Os.19385.1.S1_at--412--9291Chr01:30651292..30651316 (25 bp)
TCCCCTTAATTAGTTGCGGTGTCAT
LOC_Os01g52730
Os.19385.1.S1_at--246--8111Chr01:30651262..30651286 (25 bp)
GGACGTGTGGTCCATGAGCAAATAT
LOC_Os01g52730
Os.19385.1.S1_at--649--5571Chr01:30651226..30651250 (25 bp)
GAAAGGAAGCTTCGCCATGTGTGCC
LOC_Os01g52730
Os.19385.1.S1_at--483--10651Chr01:30651216..30651240 (25 bp)
TTCGCCATGTGTGCCTGAGTTAGGA
LOC_Os01g52730
Os.19385.1.S1_at--153--3871Chr01:30651202..30651226 (25 bp)
CTGAGTTAGGATTCTGATTATGGAC
LOC_Os01g52730
Target Sequence 
CATTGAAGGATGACCCGGCACGGCTGNCCCGTCGTTTGTGCACACATGCATGCAGAGGAGTGGACGACGACTGGTCGCCA
AACACCCGTCCNTCGTCCTCTCGGCTTGCACTGGGTGCTCCCATTTTTGTTCGTTCCCCTTAATTAGTTGCGGTGTCATG
GNGTGGACGTGTGGTCCATGAGCAAATATTNGCTCTTGTAGGAAAGGAAGCTTCGCCATGTGTGCCTGAGTTAGGATTCT
GATTATGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19385.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis