Browse Element(s) Details


Os.19385.1.S2_at

Description gb:AK107020.1
DB_XREF= gi:32992229
TID=Os.19385.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19385 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0042A10.26 (P0042A10.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-H09, full insert sequence.
FL= gb:AK107020.1 gb:AK107206.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5273011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52700NANA1+30631199..30632388hypothetical protein
LOC_Os01g52710Os.32160.1.S1_a_at11/111+30638225..30642621Glycosyl transferase family 8 protein, expressed
LOC_Os01g52710Os.32160.2.S1_x_at11/111+30638225..30642621Glycosyl transferase family 8 protein, expressed
LOC_Os01g52710Os.32160.1.S1_at11/111+30638225..30642621Glycosyl transferase family 8 protein, expressed
LOC_Os01g52720Os.24850.1.S1_at11/111+30647596..30650841auxin-induced, putative, expressed
LOC_Os01g52720OsAffx.2318.2.A1_x_at11/111+30647596..30650841auxin-induced, putative, expressed
LOC_Os01g52720Os.24850.1.S1_x_at11/111+30647596..30650841auxin-induced, putative, expressed
LOC_Os01g52720OsAffx.2318.2.A1_at8/111+30647596..30650841auxin-induced, putative, expressed
LOC_Os01g52730Os.19385.1.S2_at11/111+30649597..30651931expressed protein
LOC_Os01g52730Os.19385.1.S1_at11/111+30649597..30651931expressed protein
LOC_Os01g52730Os.19385.2.S1_at2/111+30649597..30651931expressed protein
LOC_Os01g52740NANA1+30667159..30668442expressed protein
LOC_Os01g52750Os.20579.1.S1_at11/111+30670927..30675782Subtilisin N-terminal Region family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19385.1.S2_at--292--531Chr01:30650149..30650173 (25 bp)
ATCGCACATTCAATACTGTCTCAGG
LOC_Os01g52730
Os.19385.1.S2_at--370--10051Chr01:30650108..30650132 (25 bp)
TAGATATGTAGCATCTTCCATCCCC
LOC_Os01g52730
Os.19385.1.S2_at--570--4191Chr01:30650086..30650110 (25 bp)
CCCTCTGAGTTTCATCGCTATAGTA
LOC_Os01g52730
Os.19385.1.S2_at--101--3331Chr01:30649954..30649978 (25 bp)
CACTTTACCTTCTTTGATCTCATTC
LOC_Os01g52730
Os.19385.1.S2_at--322--6391Chr01:30649939..30649963 (25 bp)
GATCTCATTCCACAGAAACCACTAC
LOC_Os01g52730
Os.19385.1.S2_at--71--2031Chr01:30649919..30649943 (25 bp)
ACTACGCCTTATCTTCCATGTTGAT
LOC_Os01g52730
Os.19385.1.S2_at--214--6651Chr01:30649900..30649924 (25 bp)
GTTGATCCCTCAGACATATCCAAAG
LOC_Os01g52730
Os.19385.1.S2_at--1153--5991Chr01:30649859..30649883 (25 bp)
GAGACCTTCCAGAATGCATATGTTG
LOC_Os01g52730
Os.19385.1.S2_at--378--4511Chr01:30649749..30649773 (25 bp)
GCCGCTTTCTTTCCAATTACAAAAG
LOC_Os01g52730
Os.19385.1.S2_at--156--1471Chr01:30649717..30649741 (25 bp)
AGCAAGCTGGTATTATCTGGTAAGT
LOC_Os01g52730
Os.19385.1.S2_at--178--5371Chr01:30649653..30649677 (25 bp)
GAAGACACTCCATAGTTCAACAGGT
LOC_Os01g52730
Target Sequence 
ATCGCACATTCAATACTGTCTCAGGATGAGGATACATACAGTAGATATGTAGCATCTTCCATCCCCTCTGAGTTTCATCG
CTATAGTATCATATGCATCAAGATCAATGAAACCATTAAACTGAAACGGAGAAAGAAATAAGGGTTTATCAGCATAATAG
CATCTACAGATATTGAGCAATGACCAAGTCAATATCACTTTACCTTCTTTGATCTCATTCCACAGAAACCACTACGCCTT
ATCTTCCATGTTGATCCCTCAGACATATCCAAAGAGAGATTGCCAGAAAAGAGACCTTCCAGAATGCATATGTTGGAAAA
ATAGTTGCAAAACTGTCAAAGCTTATAAAAATTAAATTAAGTGAATCAGGCATGAAATCTAACAAAACCATGAAAAAAAA
GGCCGCTTTCTTTCCAATTACAAAAGCCAAGACAGCAAGCTGGTATTATCTGGTAAGTTGGCAAGGACATATGAGATTCA
TGAGAATAACAACACTAGAAGACACTCCATAGTTCAACAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19385.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis