Browse Element(s) Details


Os.19385.2.S1_at

Description gb:NM_191855.1
DB_XREF= gi:34910793
GEN=P0042A10.26
TID=Os.19385.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.19385 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0042A10.26 (P0042A10.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0042A10.26 (P0042A10.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g527302/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52700NANA1+30631199..30632388hypothetical protein
LOC_Os01g52710Os.32160.1.S1_a_at11/111+30638225..30642621Glycosyl transferase family 8 protein, expressed
LOC_Os01g52710Os.32160.2.S1_x_at11/111+30638225..30642621Glycosyl transferase family 8 protein, expressed
LOC_Os01g52710Os.32160.1.S1_at11/111+30638225..30642621Glycosyl transferase family 8 protein, expressed
LOC_Os01g52720Os.24850.1.S1_at11/111+30647596..30650841auxin-induced, putative, expressed
LOC_Os01g52720OsAffx.2318.2.A1_x_at11/111+30647596..30650841auxin-induced, putative, expressed
LOC_Os01g52720Os.24850.1.S1_x_at11/111+30647596..30650841auxin-induced, putative, expressed
LOC_Os01g52720OsAffx.2318.2.A1_at8/111+30647596..30650841auxin-induced, putative, expressed
LOC_Os01g52730Os.19385.1.S2_at11/111+30649597..30651931expressed protein
LOC_Os01g52730Os.19385.1.S1_at11/111+30649597..30651931expressed protein
LOC_Os01g52730Os.19385.2.S1_at2/111+30649597..30651931expressed protein
LOC_Os01g52740NANA1+30667159..30668442expressed protein
LOC_Os01g52750Os.20579.1.S1_at11/111+30670927..30675782Subtilisin N-terminal Region family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19385.2.S1_at--237--4691NONE
GCGGATGACCGGCAATTATCACATG
NONE
Os.19385.2.S1_at--1014--2391Chr01:30650521..30650644 (25 bp)
AAAAAGTGCCGCCTAAAATCACCTG
LOC_Os01g52730
Os.19385.2.S1_at--184--3451Chr01:30650393..30650517 (25 bp)
CAGTCTTTGCACCAGATACGAATCA
LOC_Os01g52730
Os.19385.2.S1_at--1071--7611Chr01:30649527..30649551 (25 bp)
GGGACGTCAAAACATCAGAGTACCA
NONE
Os.19385.2.S1_at--741--6971Chr01:30649508..30649532 (25 bp)
GTACCAGTTGATGAAGTATCCCCAC
NONE
Os.19385.2.S1_at--895--1231Chr01:30649503..30649527 (25 bp)
AGTTGATGAAGTATCCCCACCAGCA
NONE
Os.19385.2.S1_at--274--411Chr01:30649473..30649497 (25 bp)
ATCAGTTATCTCCAATGATGCAGAT
NONE
Os.19385.2.S1_at--24--1771Chr01:30649443..30649467 (25 bp)
ACCTGGATAACAATTCCTTTCAATC
NONE
Os.19385.2.S1_at--1029--9231Chr01:30649429..30649453 (25 bp)
TCCTTTCAATCAAATCATTCCATAG
NONE
Os.19385.2.S1_at--67--6271Chr01:30649405..30649429 (25 bp)
GATGTGAATAAAGAGCTTGCCTATC
NONE
Os.19385.2.S1_at--1006--9831Chr01:30649397..30649421 (25 bp)
TAAAGAGCTTGCCTATCAGTTACAA
NONE
Target Sequence 
GCGGATGACCGGCAATTATCACATGAAAAAGTGCCGCCTAAAATCACCTGGTCCAGTCTTTGCACCAGATACGAATCAAG
AGGGATCTGAAAGAAAGGACAAGTGCTGTCGTATCATCAAAAACCATATCTTTCAACTTCGAATTGAAATTACCTTCATG
ATTTGCCATCTGTCCTGGGGAAACCCTGAAAAAGGGGACGTCAAAACATCAGAGTACCAGTTGATGAAGTATCCCCACCA
GCACCACCATCAGTTATCTCCAATGATGCAGATGATAAACCTGGATAACAATTCCTTTCAATCAAATCATTCCATAGATG
TGAATAAAGAGCTTGCCTATCAGTTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19385.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis