Browse Element(s) Details


Os.19393.1.S1_at

Description gb:AK105913.1
DB_XREF= gi:32991122
TID=Os.19393.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.19393 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-204-H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-204-H06, full insert sequence.
FL= gb:AK105913.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3611011/11Cytochrome P450 76C2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36090OsAffx.24592.1.S1_at11/112+21708358..21710843hypothetical protein
LOC_Os02g36100OsAffx.22848.3.S1_x_at3/112+21716410..21723477retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g36100OsAffx.23640.3.S1_x_at2/112+21716410..21723477retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g36100OsAffx.22848.4.S1_at2/112+21716410..21723477retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g36100OsAffx.22848.4.S1_x_at1/112+21716410..21723477retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g36100OsAffx.23640.1.S1_x_at1/112+21716410..21723477retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g36110Os.19393.1.S1_at11/112+21734435..21736158Cytochrome P450 76C2, putative, expressed
LOC_Os02g36110Os.5479.1.S1_x_at1/112+21734435..21736158Cytochrome P450 76C2, putative, expressed
LOC_Os02g36120OsAffx.12369.1.S1_at11/112+21736990..21737338hypothetical protein
LOC_Os02g36120OsAffx.24912.1.S1_at1/112+21736990..21737338hypothetical protein
LOC_Os02g36130OsAffx.30582.1.S1_s_at10/112+21740011..21741181hypothetical protein
LOC_Os02g36140Os.21776.1.S1_at10/112+21759142..21767549Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os02g36140Os.26146.1.S1_at6/112+21759142..21767549Terpene synthase family, metal binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19393.1.S1_at--665--991Chr02:21735728..21735752 (25 bp)
AGGTCACCCCCGCTGGACTTCAGGG
LOC_Os02g36110
Os.19393.1.S1_at--511--6991Chr02:21735983..21736007 (25 bp)
GTACGACTATATTGTTAGCCAGGTC
LOC_Os02g36110
Os.19393.1.S1_at--858--10451Chr02:21735997..21736021 (25 bp)
TTAGCCAGGTCATTAATTGTTCCAG
LOC_Os02g36110
Os.19393.1.S1_at--802--31Chr02:21736012..21736036 (25 bp)
ATTGTTCCAGAGTACTTTGGTTTCA
LOC_Os02g36110
Os.19393.1.S1_at--401--4351Chr02:21736018..21736042 (25 bp)
CCAGAGTACTTTGGTTTCACTATAT
LOC_Os02g36110
Os.19393.1.S1_at--483--6831Chr02:21736031..21736055 (25 bp)
GTTTCACTATATATATACGGGACCC
LOC_Os02g36110
Os.19393.1.S1_at--588--231Chr02:21736041..21736065 (25 bp)
ATATATACGGGACCCAGTGGCACGA
LOC_Os02g36110
Os.19393.1.S1_at--784--311Chr02:21736045..21736069 (25 bp)
ATACGGGACCCAGTGGCACGAGAAT
LOC_Os02g36110
Os.19393.1.S1_at--1152--8091Chr02:21736050..21736074 (25 bp)
GGACCCAGTGGCACGAGAATAATAT
LOC_Os02g36110
Os.19393.1.S1_at--441--2811Chr02:21736095..21736119 (25 bp)
AAGATTTTGTCTACGTATATCCAAC
LOC_Os02g36110
Os.19393.1.S1_at--179--10772Chr02:21736101..21736125 (25 bp)
TTGTCTACGTATATCCAACTTGCAA
LOC_Os02g36110
Target Sequence 
AGGTCACCCCCGCTGGACTTCAGGGGGAAGGACGNTGGAGTTCATGCCGTTCGGGTCCGGGAGGCGGCTGTGCCCCGGGC
TGCCGCTGGCGGAGCGCGTCGTGCCGTTCATCCTGGCGTCGATGCTGCACACGTTCGAGTGGAAGCTCCCCGGCGGCATG
ACGGCGGAGGACGTGGACGNTGTCCGAGAAGTTCAAGTCTGCCAATGTGCTTGCCGTGCCTCTCAAGGCCGTGCCTGTCC
TGATCAAATAGTCGGACGTACGACTATATTGTTAGCCAGGTCATTAATTGTTCCAGAGTACTTTGGTTTCACTATATATA
TACGGGACCCAGTGGCACGAGAATAATATGCATATGCATATATATGAATAAGATTTTGTCTACGTATATCCAACTTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19393.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis