Browse Element(s) Details


Os.19421.1.S1_at

Description gb:AK058645.1
DB_XREF= gi:32968663
TID=Os.19421.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19421 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023010P10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-018-E08, full insert sequence.
FL= gb:AK072277.1 gb:AK058645.1 gb:AK100140.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5857011/11PRLI-interacting factor A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58530OsAffx.3105.1.S1_at11/112+35773561..35775519major facilitator superfamily protein, expressed
LOC_Os02g58540OsAffx.24924.1.S1_at11/112+35777415..35778267Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g58550Os.47401.1.A1_s_at11/112+35778974..35781951chloroplast channel forming outer membrane protein, putative, expressed
LOC_Os02g58550Os.18407.1.S1_at11/112+35778974..35781951chloroplast channel forming outer membrane protein, putative, expressed
LOC_Os02g58560OsAffx.24925.1.S1_at11/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560OsAffx.24925.1.S1_x_at11/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560Os.50372.1.S2_x_at11/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560Os.17864.1.S1_at11/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560Os.38768.1.A1_at10/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560Os.50372.1.S1_at10/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560Os.38768.1.A1_s_at10/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58570Os.19421.1.S1_at11/112+35798862..35800671PRLI-interacting factor A, putative, expressed
LOC_Os02g58580Os.38243.1.S1_at11/112+35801176..35806577Metal tolerance protein C2, putative, expressed
LOC_Os02g58580Os.8441.1.S1_s_at11/112+35801176..35806577Metal tolerance protein C2, putative, expressed
LOC_Os02g58580Os.8441.1.S1_at11/112+35801176..35806577Metal tolerance protein C2, putative, expressed
LOC_Os02g58590NANA2+35808178..35812308GNT-I family protein, expressed
LOC_Os02g58600Os.22510.1.A1_at1/112+35813605..35814421hypothetical protein
LOC_Os02g58610Os.54945.1.S1_at11/112+35815834..35817102Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os02g58620Os.27485.1.S1_at1/112+35817332..35823762MATE efflux family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19421.1.S1_at--1156--1051Chr02:35800128..35800152 (25 bp)
AGGGTCAGACAAGGCTAGTGCACAA
LOC_Os02g58570
Os.19421.1.S1_at--913--5191Chr02:35800302..35800326 (25 bp)
GCAATAGCGGTTATCAGTACTGTAC
LOC_Os02g58570
Os.19421.1.S1_at--1092--8711Chr02:35800336..35800360 (25 bp)
TGTCGATGACAGATTGAGGCCGCGT
LOC_Os02g58570
Os.19421.1.S1_at--754--891Chr02:35800352..35800376 (25 bp)
AGGCCGCGTGATGTGGACTTGTTTT
LOC_Os02g58570
Os.19421.1.S1_at--656--8711Chr02:35800398..35800422 (25 bp)
TGTCGCATAACAAGTGGATCATCGT
LOC_Os02g58570
Os.19421.1.S1_at--917--6831Chr02:35800439..35800463 (25 bp)
GTTTCTACCATTCTGTGCTATCTTT
LOC_Os02g58570
Os.19421.1.S1_at--816--3691Chr02:35800456..35800480 (25 bp)
CTATCTTTGGTGTTTCTTTGCGTAT
LOC_Os02g58570
Os.19421.1.S1_at--487--8871Chr02:35800487..35800511 (25 bp)
TGATGATACCACACAGCACAACTTG
LOC_Os02g58570
Os.19421.1.S1_at--585--8751Chr02:35800510..35800534 (25 bp)
TGTAGTAGTTCTTACCTTCTGCTGC
LOC_Os02g58570
Os.19421.1.S1_at--951--6251Chr02:35800610..35800634 (25 bp)
GATGGTGTCATGAACCTGTTACTTA
LOC_Os02g58570
Os.19421.1.S1_at--614--5111Chr02:35800645..35800669 (25 bp)
GCACTCATGAAGCTATTCCTTATTT
LOC_Os02g58570
Target Sequence 
AGGGTCAGACAAGGCTAGTGCACAAGACAATGCAGAGGAGGTTGCTGATGCAGCAGTGTCAGAGAAGATCGTGCAAGACA
ATGCAGATGTTGTAGTTGCAGGGTCAGAGAGGACTGGCGAAGAGATCGGGGTTGATGCTTCGGAGATGGATTGATGGGAG
ATGGACACTGGAATGCAATAGCGGTTATCAGTACTGTACATACATAATTGTCGATGACAGATTGAGGCCGCGTGATGTGG
ACTTGTTTTGGGAGGCTTACAATTGTATGTTGTCGCATAACAAGTGGATCATCGTATTTACAATGTAATATGTTTCTACC
ATTCTGTGCTATCTTTGGTGTTTCTTTGCGTATTTGTTATGATGATACCACACAGCACAACTTGTAGTAGTTCTTACCTT
CTGCTGCTGCTGCTGAAAGAGGTAGAAGCGACTAGATGAATTTGTTACTACATCAACTATTAATGTCNTTNTAANGGTAT
CAGATGGTGTCATGAACCTGTTACTTAATTATAGATAGCACTCATGAAGCTATTCCTTATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19421.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis