Browse Element(s) Details


Os.19423.1.S1_at

Description gb:AK072913.1
DB_XREF= gi:32982936
TID=Os.19423.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19423 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023149F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023149F04, full insert sequence.
FL= gb:AK072913.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1255011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g12500OsAffx.17667.1.S1_at11/119+7165588..7170330expressed protein
LOC_Os09g12510Os.10725.1.S1_at11/119+7171525..7172592expressed protein
LOC_Os09g12520NANA9+7175508..7176211hypothetical protein
LOC_Os09g12530Os.12763.1.S1_x_at11/119+7178985..7180868glycosyl transferase, group 1 family protein, expressed
LOC_Os09g12530Os.12763.2.S1_at11/119+7178985..7180868glycosyl transferase, group 1 family protein, expressed
LOC_Os09g12540Os.52420.1.A1_at11/119+7184218..7187146Chlorophyll a-b binding protein E, chloroplast precursor, putative, expressed
LOC_Os09g12550Os.19423.1.S1_at11/119+7188541..7195750expressed protein
LOC_Os09g12560OsAffx.6254.1.S1_at11/119+7197633..7203748Ferrochelatase II, chloroplast precursor, putative, expressed
LOC_Os09g12560Os.9742.1.S1_at11/119+7197633..7203748Ferrochelatase II, chloroplast precursor, putative, expressed
LOC_Os09g12570Os.5312.1.S1_at11/119+7204143..7207198Ubiquitin-conjugating enzyme spm2, putative, expressed
LOC_Os09g12580NANA9+7215986..7216375hypothetical protein
LOC_Os09g12590NANA9+7217962..7219515Sugar transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19423.1.S1_at--595--8171Chr09:7195166..7195190 (25 bp)
GGAACTTATCTCCACAGATTCATAT
LOC_Os09g12550
Os.19423.1.S1_at--249--551Chr09:7195205..7195229 (25 bp)
ATCCCATCCCAGCTAAATCATGGTG
LOC_Os09g12550
Os.19423.1.S1_at--95--2511Chr09:7195247..7195271 (25 bp)
AACATGCAGATGTTCGCCTTCCTGA
LOC_Os09g12550
Os.19423.1.S1_at--193--4451Chr09:7195262..7195286 (25 bp)
GCCTTCCTGAGTAATCCACAACATG
LOC_Os09g12550
Os.19423.1.S1_at--418--6591Chr09:7195286..7195310 (25 bp)
GATTGCACTGAGACTCCGGAAAACA
LOC_Os09g12550
Os.19423.1.S1_at--883--10631Chr09:7195332..7195356 (25 bp)
TTCGCTCTGCACCTAGGTAACAGTG
LOC_Os09g12550
Os.19423.1.S1_at--837--5491Chr09:7195390..7195414 (25 bp)
GAACAGTCAAGGAAACCGCTCCCGG
LOC_Os09g12550
Os.19423.1.S1_at--121--6351Chr09:7195476..7195500 (25 bp)
GATGCTGGTGTATTGATGCTGCCTT
LOC_Os09g12550
Os.19423.1.S1_at--329--3851Chr09:7195566..7195590 (25 bp)
CTGCATGACGTTGTCCTAATGGACT
LOC_Os09g12550
Os.19423.1.S1_at--1031--2711Chr09:7195618..7195642 (25 bp)
AAGCACATACGCTCTTATTAACATG
LOC_Os09g12550
Os.19423.1.S1_at--141--2251Chr09:7195657..7195681 (25 bp)
AAATCTTTTTTCTGCCGGTATATGG
LOC_Os09g12550
Target Sequence 
GGAACTTATCTCCACAGATTCATATGCCCAATGAATCATATCCCATCCCAGCTAAATCATGGTGGTCAATTTTGAAGGAC
CAACATGCAGATGTTCGCCTTCCTGAGTAATCCACAACATGATTGCACTGAGACTCCGGAAAACATTTTGTGACGATCAT
GAAGACTTCGCTCTGCACCTAGGTAACAGTGACGCGGGTAAGAACTAAGAAGCAAGCTGTGAGAGAACAGTCAAGGAAAC
CGCTCCCGGTGGCAGCATATGTGACTAAGTTAGTGGTTGACTAATTTCATTGCTAGAGGTAGAGCAGGAGGATGCTGGTG
TATTGATGCTGCCTTAGCCAGAAAATGGGGTAGCAGATGAAATCTAGCAATTGGCATACATGTCAATGTGTCATGTTGCT
CTGCATGACGTTGTCCTAATGGACTGTAACAATGGGATGTTGCTGCAATCAGAAGCACATACGCTCTTATTAACATGATT
TGCTGTTATGCAAATCTTTTTTCTGCCGGTATATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19423.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis