Browse Element(s) Details


Os.19553.1.S1_at

Description gb:AK065440.1
DB_XREF= gi:32975458
TID=Os.19553.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19553 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013020K21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013020K21, full insert sequence.
FL= gb:AK065440.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4942011/11G-box binding factor 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49360NANA5+28226592..28227075hypothetical protein
LOC_Os05g49370Os.50975.1.S1_at11/115+28227633..28228661expressed protein
LOC_Os05g49380Os.17122.1.S1_at11/115+28231795..28235367Protease Do-like 1, chloroplast precursor, putative, expressed
LOC_Os05g49390OsAffx.27381.1.S1_at11/115+28236893..28242625hypothetical protein
LOC_Os05g49400OsAffx.15164.1.S1_at11/115+28244147..28245511F-box domain containing protein
LOC_Os05g49410Os.49345.1.S1_at10/115+28246150..28247425expressed protein
LOC_Os05g49420Os.19553.1.S1_at11/115+28251474..28256334G-box binding factor 1, putative, expressed
LOC_Os05g49430Os.33445.1.A1_at11/115+28259281..28261831Possible apospory-associated protein C, putative, expressed
LOC_Os05g49440Os.2250.1.S1_a_at11/115+28263471..28264618secreted protein, putative, expressed
LOC_Os05g49450OsAffx.15165.1.S1_at11/115+28265893..28267203F-box domain containing protein
LOC_Os05g49460OsAffx.15166.2.S1_at11/115+28268587..28273535CTP synthase family protein
LOC_Os05g49470Os.51690.1.S1_at11/115+28273744..28275805expressed protein
LOC_Os05g49480Os.52814.1.S1_at11/115+28277330..28278658transcription factor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009637biological_processresponse to blue light
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19553.1.S1_at--975--8051Chr05:28255753..28255777 (25 bp)
GGAGAACTTTTTGTCAATGATCGAC
LOC_Os05g49420
Os.19553.1.S1_at--649--5511Chr05:28255783..28255807 (25 bp)
GAACAAGACGAGTGTCAGACACACA
LOC_Os05g49420
Os.19553.1.S1_at--143--2151Chr05:28255805..28255829 (25 bp)
ACAGAGCATGCTGAACCCAAGCTTC
LOC_Os05g49420
Os.19553.1.S1_at--430--3311Chr05:28255897..28255921 (25 bp)
CACAGAGGAGAGACTACGCGCATGC
LOC_Os05g49420
Os.19553.1.S1_at--1128--3731Chr05:28255953..28255977 (25 bp)
CTCACATAACATTCGGCAGTACAGT
LOC_Os05g49420
Os.19553.1.S1_at--335--2131Chr05:28255973..28255997 (25 bp)
ACAGTGTTAGGTGTCAATTTGGTCA
LOC_Os05g49420
Os.19553.1.S1_at--1009--1191Chr05:28255997..28256021 (25 bp)
AGTATATTCAGGTGACCATCTACTA
LOC_Os05g49420
Os.19553.1.S1_at--147--3351Chr05:28256091..28256115 (25 bp)
CACGTTTTAGCAGTGTTGTAACATA
LOC_Os05g49420
Os.19553.1.S1_at--459--10831Chr05:28256147..28256171 (25 bp)
TTGTGAGATCGCTAAACACTTTTTA
LOC_Os05g49420
Os.19553.1.S1_at--491--2071Chr05:28256223..28256247 (25 bp)
ACTTGGGTATATGGGCCCATATTCT
LOC_Os05g49420
Os.19553.1.S1_at--524--3491Chr05:28256251..28256275 (25 bp)
CATGGCTTGGAACTGTAACTTTGTA
LOC_Os05g49420
Target Sequence 
GGAGAACTTTTTGTCAATGATCGACAACACGAACAAGACGAGTGTCAGACACACAGAGCATGCTGAACCCAAGCTTCGNA
CAACTCCTCGGCTCCGGCCCGGCCACTGATGTTGTTGCTGCAAGCTAATCTGCCATTTTCCCTGTCACAGAGGAGAGACT
ACGCGCATGCGGCCTGGGGATTTTGCAAGCTCACGCTACTACTCACATAACATTCGGCAGTACAGTGTTAGGTGTCAATT
TGGTCAGTATATTCAGGTGACCATCTACTACTCAAAATACCGTTTCCAATTGCTGTTCCCTGCTCAGGCATGGAAGCTTG
CTAGGTGAGACCAATGTACCACGTTTTAGCAGTGTTGTAACATAGGGGTGTTGTGCTGCATGCCAACCTCAAACCTTGTG
AGATCGCTAAACACTTTTTAGAATTGAAATTTGTGGAGACCAAACTAAATGAAATGTAACCTACCCTTTTTACTTGGGTA
TATGGGCCCATATTCTNTTACATGGCTTGGAACTGTAACTTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19553.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis