Browse Element(s) Details


Os.19575.2.S1_at

Description gb:CB668830
DB_XREF= gi:29672555
DB_XREF=OSJNEd16N22.f
CLONE=OSJNEd16N22
TID=Os.19575.2
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.19575 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_173549.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3001010/11Calcium binding EGF domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g29970OsAffx.26243.1.S1_at11/114+17694340..17695192hypothetical protein
LOC_Os04g29980NANA4+17697317..17698645transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29990OsAffx.3947.1.S1_at11/114+17700755..17704183Calcium binding EGF domain containing protein
LOC_Os04g30000OsAffx.26244.1.S1_at10/114+17716533..17717106hypothetical protein
LOC_Os04g30010Os.19575.1.A1_at11/114+17718708..17722411Calcium binding EGF domain containing protein, expressed
LOC_Os04g30010Os.19575.2.S1_at10/114+17718708..17722411Calcium binding EGF domain containing protein, expressed
LOC_Os04g30020OsAffx.14038.1.S1_at11/114+17725145..17725522hypothetical protein
LOC_Os04g30030Os.50127.1.S1_at4/114+17726046..17729387Protein kinase domain containing protein
LOC_Os04g30040OsAffx.14039.1.S1_s_at11/114+17742051..17753089Jacalin-like lectin domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19575.2.S1_at--1065--2831Chr04:17721784..17721808 (25 bp)
AAGTACTACCGCGTCAGGTTCGACA
LOC_Os04g30010
Os.19575.2.S1_at--774--2171Chr04:17721762..17721786 (25 bp)
ACACGGGCTTCAACACCTCGGAGAT
LOC_Os04g30010
Os.19575.2.S1_at--580--8051Chr04:17721743..17721767 (25 bp)
GGAGATCTACAACGTCAGCCGCTGC
LOC_Os04g30010
Os.19575.2.S1_at--9--6251Chr04:17721704..17721728 (25 bp)
GATGGAGTCGAAGGCCTTCAGCTTC
LOC_Os04g30010
Os.19575.2.S1_at--621--10531Chr04:17721688..17721712 (25 bp)
TTCAGCTTCCGGACGAGCTACGTGA
LOC_Os04g30010
Os.19575.2.S1_at--371--1571Chr04:17721673..17721697 (25 bp)
AGCTACGTGAGCTCGCTGGAATTTA
LOC_Os04g30010
Os.19575.2.S1_at--464--5991Chr04:17721595..17721619 (25 bp)
GAGACTTGTGATAAAGCCCGCAGAA
LOC_Os04g30010
Os.19575.2.S1_at--991--1911NONE
ACGGGCAGCACGGTTGCACAGATAT
NONE
Os.19575.2.S1_at--100--6131Chr04:17720704..17720728 (25 bp)
GAGTGTGCGGATCCGAAGTACCCTT
LOC_Os04g30010
Os.19575.2.S1_at--459--7291Chr04:17720674..17720698 (25 bp)
GTGCCTGGAACTTGCCATAATCTTC
LOC_Os04g30010
Os.19575.2.S1_at--407--3571Chr04:17720659..17720683 (25 bp)
CATAATCTTCCTGGCGGGTTCGAGT
LOC_Os04g30010
Target Sequence 
AAGTACTACCGCGTCAGGTTCGACACGGGCTTCAACACCTCGGAGATCTACAACGTCAGCCGCTGCAGCTACGCGGTGCT
GATGGAGTCGAAGGCCTTCAGCTTCCGGACGAGCTACGTGAGCTCGCTGGAATTTAACAGCAGCAACGGTGGCAGGGNGC
CGTTGGTGGTGGATTGGGCTATCGGAAACGAGACTTGTGATAAAGCCCGCAGAAAGGTTGACACCTATGNATGTGTCAGC
NACAACAGCNAGTGCTTCAACTCGNCCAACGGACCAGGCTACATCTGCAACTGCTCCNAAGGGTACCAAGGTAACCCCTA
CCTGCAGGACGGGCAGCACGGTTGCACAGATATAGACGAGTGTGCGGATCCGAAGTACCCTTGTTCCGTGCCTGGAACTT
GCCATAATCTTCCTGGCGGGTTCGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19575.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis