Browse Element(s) Details


Os.19616.1.S1_at

Description gb:AK103444.1
DB_XREF= gi:32988653
TID=Os.19616.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.19616 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033129E14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033129E14, full insert sequence.
FL= gb:AK060463.1 gb:AK103444.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0155011/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01500OsAffx.14490.1.S1_at11/115+269467..275203CAP-Gly domain containing protein, expressed
LOC_Os05g01500Os.18560.1.S1_at10/115+269467..275203CAP-Gly domain containing protein, expressed
LOC_Os05g01510OsAffx.26678.1.S1_at9/115+279532..281914cytoplasmic membrane protein, putative
LOC_Os05g01510Os.12600.1.S1_at7/115+279532..281914cytoplasmic membrane protein, putative
LOC_Os05g01520Os.27562.1.S1_at11/115+282174..289147YT521-B-like family protein, expressed
LOC_Os05g01530Os.11969.1.S1_at11/115+290696..291722expressed protein
LOC_Os05g01540Os.27339.1.S1_at11/115+295261..298816retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g01550Os.19616.1.S1_at11/115+299203..302456Zinc finger, C2H2 type family protein, expressed
LOC_Os05g01560Os.37899.1.S1_at11/115+304176..306192Vacuolar ATP synthase 16 kDa proteolipid subunit, putative, expressed
LOC_Os05g01570Os.7779.1.S1_x_at11/115+316959..318821Integral membrane protein DUF6 containing protein, expressed
LOC_Os05g01580OsAffx.14491.1.S1_at11/115+323538..325468Integral membrane protein DUF6 containing protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19616.1.S1_at--351--1471Chr05:299768..299792 (25 bp)
AGAATGGTAGGATTGCTGCACATGC
LOC_Os05g01550
Os.19616.1.S1_at--987--3451Chr05:299736..299760 (25 bp)
CATGCTGTAAATGATCGTGCCAATC
LOC_Os05g01550
Os.19616.1.S1_at--347--2531Chr05:299706..299730 (25 bp)
AACTATGCTGAGATTGTCGACCTTG
LOC_Os05g01550
Os.19616.1.S1_at--395--7211Chr05:299691..299715 (25 bp)
GTCGACCTTGCACCGAATCCAAAAA
LOC_Os05g01550
Os.19616.1.S1_at--1062--10231Chr05:299425..299449 (25 bp)
TTTGTCCTTTACTAACATCCTGCTG
LOC_Os05g01550
Os.19616.1.S1_at--1127--1031Chr05:299376..299400 (25 bp)
AGACGTGGTGGCTGATACCTTTACT
LOC_Os05g01550
Os.19616.1.S1_at--1122--9951Chr05:299361..299385 (25 bp)
TACCTTTACTAATCTGCGTGCATTC
LOC_Os05g01550
Os.19616.1.S1_at--42--4671Chr05:299346..299370 (25 bp)
GCGTGCATTCTGAACCCTGGAAGTA
LOC_Os05g01550
Os.19616.1.S1_at--298--4491Chr05:299280..299304 (25 bp)
GCCGTGATTGTGTGGTTTGGTCATA
LOC_Os05g01550
Os.19616.1.S1_at--170--7151Chr05:299251..299275 (25 bp)
GTCTTTGTATGCGACTTATTCTCGT
LOC_Os05g01550
Os.19616.1.S1_at--624--111Chr05:299234..299258 (25 bp)
ATTCTCGTTCAGTTTTTTATGCTCG
LOC_Os05g01550
Target Sequence 
AGAATGGTAGGATTGCTGCACATGCAAGTGAGCATGCTGTAAATGATCGTGCCAATCAGTATAACTATGCTGAGATTGTC
GACCTTGCACCGAATCCAAAAAGGAGCAAGACAAATTCAGGGCATAAGACCCCCTCATCTAATAAAGCCTACAATGTCAA
GATTTCTAGCGTGTTGCCTGCTGATATCAGTGGAGTGAAGAATCAGTGGCCAGGTAAGTATGAAGATGACAGTGAAGAGA
CAGAAGAAGACCAGGGCAACAACATTGAAGATGGCTGGAGATATGGTAACCAGAATGCCGATGATGAGGAAACAGAATAT
GAAGATTAACCNAACGATTCTCTTTTGTCCTTTACTAACATCCTGCTGCAATATATGCANTAACTAGACAGTAGACGTGG
TGGCTGATACCTTTACTAATCTGCGTGCATTCTGAACCCTGGAAGTAGATTAGAGAAGTGCTGTTCTTGAGAGTAGTAGA
ATCAGATGGCCGTGATTGTGTGGTTTGGTCATAAATAGTCTTTGTATGCGACTTATTCTCGTTCAGTTTTTTATGCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19616.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis