Browse Element(s) Details


Os.19737.1.S1_at

Description gb:AK073767.1
DB_XREF= gi:32983790
TID=Os.19737.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19737 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033068K22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033068K22, full insert sequence.
FL= gb:AK073767.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2530011/11Peroxidase family protein, expressed
LOC_Os03g252801/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25250OsAffx.13020.1.S1_at11/113+14401786..14403135hypothetical protein
LOC_Os03g25260OsAffx.13021.1.S1_s_at11/113+14403480..14406488HIT zinc finger family protein, expressed
LOC_Os03g25260Os.55755.1.S1_at4/113+14403480..14406488HIT zinc finger family protein, expressed
LOC_Os03g25260OsAffx.13021.1.S1_at1/113+14403480..14406488HIT zinc finger family protein, expressed
LOC_Os03g25270Os.2952.2.S1_at11/113+14410433..14414216pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os03g25270Os.2952.1.S1_x_at11/113+14410433..14414216pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os03g25270OsAffx.30040.1.S1_at1/113+14410433..14414216pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os03g25280Os.2965.1.S1_at11/113+14414919..14416258Peroxidase family protein, expressed
LOC_Os03g25280Os.19737.1.S1_at1/113+14414919..14416258Peroxidase family protein, expressed
LOC_Os03g25289NANA3+14417534..14418374auxin induced protein, putative
LOC_Os03g25300Os.19737.1.S1_at11/113+14424307..14425682Peroxidase family protein, expressed
LOC_Os03g25304NANA3+14425940..14426473Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g25310NANA3+14427400..14428222hypothetical protein
LOC_Os03g25314OsAffx.13024.1.S1_at11/113+14429059..14429430hypothetical protein
LOC_Os03g25320NANA3+14433532..14435292Peroxidase family protein
LOC_Os03g25330Os.2957.1.S1_at11/113+14448495..14450047Peroxidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19737.1.S1_at--14--2532Chr03:14425141..14425165 (25 bp)
AACTTCCTCAAGCAGAGGTGCCCGG
LOC_Os03g25300
Os.19737.1.S1_at--305--9271Chr03:14425465..14425489 (25 bp)
TCCGACTAATGCAAACCCATCGATC
LOC_Os03g25300
Os.19737.1.S1_at--1070--5131Chr03:14425475..14425499 (25 bp)
GCAAACCCATCGATCTATACGTTCA
LOC_Os03g25300
Os.19737.1.S1_at--1161--6511Chr03:14425495..14425519 (25 bp)
GTTCATTCGTTTGTTTTCCAGGACT
LOC_Os03g25300
Os.19737.1.S1_at--283--951Chr03:14425514..14425538 (25 bp)
AGGACTTTGTTCTTCTGATCGATTC
LOC_Os03g25300
Os.19737.1.S1_at--404--10571Chr03:14425526..14425550 (25 bp)
TTCTGATCGATTCGACATGACGTAC
LOC_Os03g25300
Os.19737.1.S1_at--60--8951Chr03:14425543..14425567 (25 bp)
TGACGTACTACATTTCTTGGTTCTT
LOC_Os03g25300
Os.19737.1.S1_at--205--3651Chr03:14425565..14425589 (25 bp)
CTTTTGGCCGTTGGTACGGCTTGCA
LOC_Os03g25300
Os.19737.1.S1_at--616--9931Chr03:14425579..14425603 (25 bp)
TACGGCTTGCATTATCCCTCTAAAA
LOC_Os03g25300
Os.19737.1.S1_at--1015--9311Chr03:14425593..14425617 (25 bp)
TCCCTCTAAAACCACCATGACAATG
LOC_Os03g25300
Os.19737.1.S1_at--531--2211Chr03:14425657..14425681 (25 bp)
ACAAGCCTCATCTCTTTTTTATTGG
LOC_Os03g25300
Target Sequence 
AACTTCCTCAAGCAGAGGTGCCCGGCCAACCCGACCTCCAGCAACGACCCGACGGTGAACCAGGACGCCGTCACGCCCAA
CGCGTTCGACAACCAGTACTACAAGAACGTGGTGGCGCACAAGGTGCTCTTCGCGTCGGACGCGGCGCTGCTGACGTCGC
CGGCGACGGCGAAGATGGTGTCGGACAACGCCAACATCCCGGGGTGGTGGNAGGACAAGTTCGCNAAGNCGTTCGTCAAG
ATGGCATCCGTCGNTGTCAAGACCGGCTACCCCGGCNAGATCAGGAGGCACTGCAGGGTCGTCAACTAATCATCATCGGG
TCANTCCGACTAATGCAAACCCATCGATCTATACGTTCATTCGTTTGTTTTCCAGGACTTTGTTCTTCTGATCGATTCGA
CATGACGTACTACATTTCTTGGTTCTTTTGGCCGTTGGTACGGCTTGCATTATCCCTCTAAAACCACCATGACAATGAAC
TGTACNTGNATAAANTCATCTCTCATAATAATTAANACAAGCCTCATCTCTTTTTTATTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19737.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis