Browse Element(s) Details


Os.19951.1.S1_x_at

Description gb:AJ494928.1
DB_XREF= gi:27527462
TID=Os.19951.1
CNT=1
FEA=RNA
TIER=ConsEnd
STK=0
UG=Os.19951 (NCBI UniGene Cluster)
UG_TITLE=Z226 snoRNA
DEF=Oryza sativa Z226 snoRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g077601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07730Os.9655.1.S1_s_at11/1112+3878353..3884319SWIRM domain containing protein, expressed
LOC_Os12g07730Os.9655.1.S1_at11/1112+3878353..3884319SWIRM domain containing protein, expressed
LOC_Os12g07740Os.12630.1.S1_at11/1112+3884395..3888692Eukaryotic translation initiation factor 2 gamma subunit, putative, expressed
LOC_Os12g07750OsAffx.22848.4.S1_at2/1112+3892614..3897332retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g07750OsAffx.22848.3.S1_x_at2/1112+3892614..3897332retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g07750OsAffx.22848.4.S1_x_at1/1112+3892614..3897332retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g07760OsAffx.7518.1.S1_at11/1112+3908135..3908659hypothetical protein
LOC_Os12g07760Os.19951.1.S1_x_at1/1112+3908135..3908659hypothetical protein
LOC_Os12g07770NANA12+3917238..3920109transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g07780Os.14642.1.S1_at11/1112+3931470..3934989Eukaryotic aspartyl protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19951.1.S1_x_at--407--4011Chr10:18766621..18766645 (25 bp)
CGTTATCTTCCTGATTACATGTGAG
NONE
Os.19951.1.S1_x_at--406--10431Chr10:18766619..18766643 (25 bp)
TTATCTTCCTGATTACATGTGAGGC
NONE
Os.19951.1.S1_x_at--818--431Chr10:18766617..18766641 (25 bp)
ATCTTCCTGATTACATGTGAGGCTG
NONE
Os.19951.1.S1_x_at--923--3631Chr10:18766615..18766639 (25 bp)
CTTCCTGATTACATGTGAGGCTGTT
NONE
Os.19951.1.S1_x_at--453--3871Chr10:18766611..18766635 (25 bp)
CTGATTACATGTGAGGCTGTTGCTA
NONE
Os.19951.1.S1_x_at--871--6551Chr10:18766609..18766633 (25 bp)
GATTACATGTGAGGCTGTTGCTATC
NONE
Os.19951.1.S1_x_at--233--10491Chr10:18766607..18766631 (25 bp)
TTACATGTGAGGCTGTTGCTATCAT
NONE
Os.19951.1.S1_x_at--744--9871Chr10:18766606..18766630 (25 bp)
TACATGTGAGGCTGTTGCTATCATG
NONE
Os.19951.1.S1_x_at--723--7391Chr10:18766601..18766625 (25 bp)
GTGAGGCTGTTGCTATCATGGCCAT
NONE
Os.19951.1.S1_x_at--559--911Chr10:18766598..18766622 (25 bp)
AGGCTGTTGCTATCATGGCCATGGC
NONE
Os.19951.1.S1_x_at--764--3872Chr12:3908337..3908416 (25 bp)
CTGTTGCTATCATGGCCATGGCCTC
LOC_Os12g07760
Target Sequence 
CGTTATCTTCCTGATTACATGTGAGGCTGTTGCTATCATGGCCATGGCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19951.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis