Browse Element(s) Details


Os.9655.1.S1_at

Description gb:AU085925
DB_XREF= gi:7332579
DB_XREF=AU085925
CLONE=E2846
TID=Os.9655.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.9655 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_173589.1 (A.thaliana) putative transcriptional regulatory protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0773011/11SWIRM domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07670Os.9399.1.S1_at11/1112+3854807..3860044Endomembrane protein 70 containing protein, expressed
LOC_Os12g07670Os.5209.2.S1_at1/1112+3854807..3860044Endomembrane protein 70 containing protein, expressed
LOC_Os12g07680Os.15933.1.A1_at11/1112+3860315..3862882RNase P subunit p30 family protein, expressed
LOC_Os12g07680Os.15933.1.A1_s_at11/1112+3860315..3862882RNase P subunit p30 family protein, expressed
LOC_Os12g07690OsAffx.19537.1.S1_x_at11/1112+3863181..3863606Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os12g07700Os.5621.1.S1_s_at11/1112+3866730..3868852nitrogen fixation protein, putative, expressed
LOC_Os12g07710Os.9156.1.S1_at11/1112+3869943..3870558expressed protein
LOC_Os12g07720Os.276.1.S1_at11/1112+3872349..3876348Activator 1 37 kDa subunit, putative, expressed
LOC_Os12g07730Os.9655.1.S1_s_at11/1112+3878353..3884319SWIRM domain containing protein, expressed
LOC_Os12g07730Os.9655.1.S1_at11/1112+3878353..3884319SWIRM domain containing protein, expressed
LOC_Os12g07740Os.12630.1.S1_at11/1112+3884395..3888692Eukaryotic translation initiation factor 2 gamma subunit, putative, expressed
LOC_Os12g07750OsAffx.22848.4.S1_at2/1112+3892614..3897332retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g07750OsAffx.22848.3.S1_x_at2/1112+3892614..3897332retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g07750OsAffx.22848.4.S1_x_at1/1112+3892614..3897332retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g07760OsAffx.7518.1.S1_at11/1112+3908135..3908659hypothetical protein
LOC_Os12g07760Os.19951.1.S1_x_at1/1112+3908135..3908659hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006338biological_processchromatin remodeling
GO:0016514cellular_componentSWI/SNF complex
GO:0016585cellular_componentchromatin remodeling complex
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9655.1.S1_at--43--2451Chr12:3884116..3884140 (25 bp)
AAAATCTCAATTGTTTGATAGCTTT
LOC_Os12g07730
Os.9655.1.S1_at--683--211Chr12:3884143..3884167 (25 bp)
ATATTCCAGTGCCTAGCCTAAGTAA
LOC_Os12g07730
Os.9655.1.S1_at--1101--7271Chr12:3884151..3884175 (25 bp)
GTGCCTAGCCTAAGTAAGGTTGCGT
LOC_Os12g07730
Os.9655.1.S1_at--872--4451Chr12:3884158..3884182 (25 bp)
GCCTAAGTAAGGTTGCGTATAGAAA
LOC_Os12g07730
Os.9655.1.S1_at--808--7571Chr12:3884186..3884210 (25 bp)
GGGCTCATCCTGAATCGAACAACTG
LOC_Os12g07730
Os.9655.1.S1_at--507--4811Chr12:3884188..3884212 (25 bp)
GCTCATCCTGAATCGAACAACTGTT
LOC_Os12g07730
Os.9655.1.S1_at--236--5511Chr12:3884202..3884226 (25 bp)
GAACAACTGTTTCTCCTGACTGCTA
LOC_Os12g07730
Os.9655.1.S1_at--955--2551Chr12:3884206..3884230 (25 bp)
AACTGTTTCTCCTGACTGCTACTGT
LOC_Os12g07730
Os.9655.1.S1_at--1160--10571Chr12:3884212..3884236 (25 bp)
TTCTCCTGACTGCTACTGTAGAAGA
LOC_Os12g07730
Os.9655.1.S1_at--606--4851Chr12:3884223..3884247 (25 bp)
GCTACTGTAGAAGATACCTGTGCAA
LOC_Os12g07730
Os.9655.1.S1_at--279--5351Chr12:3884232..3884256 (25 bp)
GAAGATACCTGTGCAAAGGTTACAT
LOC_Os12g07730
Target Sequence 
AAAATCTCAATTGTTTGATAGCTTTNGATATTCCAGTGCCTAGCCTAAGTAAGGTTGCGTATAGAAATGGGGGCTCATCC
TGAATCGAACAACTGTTTCTCCTGACTGCTACTGTAGAAGATACCTGTGCAAAGGTTACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9655.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis